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Report for CCDS13942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13942.1 Public Homo sapiens 22 IL2RB 24 110 108 CCDS HistoryNCBI Gene:3560Re-query CCDS DB by CCDS ID:13942.1Re-query CCDS DB by GeneID:3560See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13942.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000216223.10 ENSP00000216223.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000216223.10Link to Ensembl Protein Viewer:ENSP00000216223.5Re-query CCDS DB by Nucleotide ID:ENST00000216223Re-query CCDS DB by Protein ID:ENSP00000216223
Original member Current member EBI ENST00000445595.2 ENSP00000401020.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000445595.2Link to Ensembl Protein Viewer:ENSP00000401020.2Re-query CCDS DB by Nucleotide ID:ENST00000445595Re-query CCDS DB by Protein ID:ENSP00000401020
Original member Current member EBI ENST00000429622.6 ENSP00000402685.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000429622.6Link to Ensembl Protein Viewer:ENSP00000402685.2Re-query CCDS DB by Nucleotide ID:ENST00000429622Re-query CCDS DB by Protein ID:ENSP00000402685
Original member Current member EBI ENST00000453962.6 ENSP00000403731.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000453962.6Link to Ensembl Protein Viewer:ENSP00000403731.2Re-query CCDS DB by Nucleotide ID:ENST00000453962Re-query CCDS DB by Protein ID:ENSP00000403731
Original member Current member EBI ENST00000698883.1 ENSP00000514005.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698883.1Link to Ensembl Protein Viewer:ENSP00000514005.1Re-query CCDS DB by Nucleotide ID:ENST00000698883Re-query CCDS DB by Protein ID:ENSP00000514005
Original member Current member EBI ENST00000698890.1 ENSP00000514009.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698890.1Link to Ensembl Protein Viewer:ENSP00000514009.1Re-query CCDS DB by Nucleotide ID:ENST00000698890Re-query CCDS DB by Protein ID:ENSP00000514009
Original member Current member EBI ENST00000698892.1 ENSP00000514011.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698892.1Link to Ensembl Protein Viewer:ENSP00000514011.1Re-query CCDS DB by Nucleotide ID:ENST00000698892Re-query CCDS DB by Protein ID:ENSP00000514011
Original member Current member EBI ENST00000698893.1 ENSP00000514012.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698893.1Link to Ensembl Protein Viewer:ENSP00000514012.1Re-query CCDS DB by Nucleotide ID:ENST00000698893Re-query CCDS DB by Protein ID:ENSP00000514012
Original member Current member NCBI NM_000878.5 NP_000869.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_000878.5Link to Protein Sequence:NP_000869.1Re-query CCDS DB by Nucleotide ID:NM_000878Re-query CCDS DB by Protein ID:NP_000869Link to BLAST:NP_000869.1
Original member Current member NCBI NM_001346222.1 NP_001333151.1 Accepted alive Link to Nucleotide Sequence:NM_001346222.1Link to Protein Sequence:NP_001333151.1Re-query CCDS DB by Nucleotide ID:NM_001346222Re-query CCDS DB by Protein ID:NP_001333151Link to BLAST:NP_001333151.1
Original member Current member NCBI NM_001346223.2 NP_001333152.1 Accepted alive Link to Nucleotide Sequence:NM_001346223.2Link to Protein Sequence:NP_001333152.1Re-query CCDS DB by Nucleotide ID:NM_001346223Re-query CCDS DB by Protein ID:NP_001333152Link to BLAST:NP_001333152.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000869.1 551 P14784 551 100% 0 0
NP_001333151.1 551 P14784 551 100% 0 0
NP_001333152.1 551 P14784 551 100% 0 0

Chromosomal Locations for CCDS 13942.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 37128096 37128848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37132384 37132468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37135328 37135442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37136228 37136393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37137587 37137735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37139117 37139222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37142434 37142512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37143521 37143635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 37144085 37144172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1656 nt):
ATGGCGGCCCCTGCTCTGTCCTGGCGTCTGCCCCTCCTCATCCTCCTCCTGCCCCTGGCTACCTCTTGGG
CATCTGCAGCGGTGAATGGCACTTCCCAGTTCACATGCTTCTACAACTCGAGAGCCAACATCTCCTGTGT
CTGGAGCCAAGATGGGGCTCTGCAGGACACTTCCTGCCAAGTCCATGCCTGGCCGGACAGACGGCGGTGG
AACCAAACCTGTGAGCTGCTCCCCGTGAGTCAAGCATCCTGGGCCTGCAACCTGATCCTCGGAGCCCCAG
ATTCTCAGAAACTGACCACAGTTGACATCGTCACCCTGAGGGTGCTGTGCCGTGAGGGGGTGCGATGGAG
GGTGATGGCCATCCAGGACTTCAAGCCCTTTGAGAACCTTCGCCTGATGGCCCCCATCTCCCTCCAAGTT
GTCCACGTGGAGACCCACAGATGCAACATAAGCTGGGAAATCTCCCAAGCCTCCCACTACTTTGAAAGAC
ACCTGGAGTTCGAGGCCCGGACGCTGTCCCCAGGCCACACCTGGGAGGAGGCCCCCCTGCTGACTCTCAA
GCAGAAGCAGGAATGGATCTGCCTGGAGACGCTCACCCCAGACACCCAGTATGAGTTTCAGGTGCGGGTC
AAGCCTCTGCAAGGCGAGTTCACGACCTGGAGCCCCTGGAGCCAGCCCCTGGCCTTCAGGACAAAGCCTG
CAGCCCTTGGGAAGGACACCATTCCGTGGCTCGGCCACCTCCTCGTGGGCCTCAGCGGGGCTTTTGGCTT
CATCATCTTAGTGTACTTGCTGATCAACTGCAGGAACACCGGGCCATGGCTGAAGAAGGTCCTGAAGTGT
AACACCCCAGACCCCTCGAAGTTCTTTTCCCAGCTGAGCTCAGAGCATGGAGGAGACGTCCAGAAGTGGC
TCTCTTCGCCCTTCCCCTCATCGTCCTTCAGCCCTGGCGGCCTGGCACCTGAGATCTCGCCACTAGAAGT
GCTGGAGAGGGACAAGGTGACGCAGCTGCTCCTGCAGCAGGACAAGGTGCCTGAGCCCGCATCCTTAAGC
AGCAACCACTCGCTGACCAGCTGCTTCACCAACCAGGGTTACTTCTTCTTCCACCTCCCGGATGCCTTGG
AGATAGAGGCCTGCCAGGTGTACTTTACTTACGACCCCTACTCAGAGGAAGACCCTGATGAGGGTGTGGC
CGGGGCACCCACAGGGTCTTCCCCCCAACCCCTGCAGCCTCTGTCAGGGGAGGACGACGCCTACTGCACC
TTCCCCTCCAGGGATGACCTGCTGCTCTTCTCCCCCAGTCTCCTCGGTGGCCCCAGCCCCCCAAGCACTG
CCCCTGGGGGCAGTGGGGCCGGTGAAGAGAGGATGCCCCCTTCTTTGCAAGAAAGAGTCCCCAGAGACTG
GGACCCCCAGCCCCTGGGGCCTCCCACCCCAGGAGTCCCAGACCTGGTGGATTTTCAGCCACCCCCTGAG
CTGGTGCTGCGAGAGGCTGGGGAGGAGGTCCCTGACGCTGGCCCCAGGGAGGGAGTCAGTTTCCCCTGGT
CCAGGCCTCCTGGGCAGGGGGAGTTCAGGGCCCTTAATGCTCGCCTGCCCCTGAACACTGATGCCTACTT
GTCCCTCCAAGAACTCCAGGGTCAGGACCCAACTCACTTGGTGTAG

Translation (551 aa):
MAAPALSWRLPLLILLLPLATSWASAAVNGTSQFTCFYNSRANISCVWSQDGALQDTSCQVHAWPDRRRW
NQTCELLPVSQASWACNLILGAPDSQKLTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLMAPISLQV
VHVETHRCNISWEISQASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRV
KPLQGEFTTWSPWSQPLAFRTKPAALGKDTIPWLGHLLVGLSGAFGFIILVYLLINCRNTGPWLKKVLKC
NTPDPSKFFSQLSSEHGGDVQKWLSSPFPSSSFSPGGLAPEISPLEVLERDKVTQLLLQQDKVPEPASLS
SNHSLTSCFTNQGYFFFHLPDALEIEACQVYFTYDPYSEEDPDEGVAGAPTGSSPQPLQPLSGEDDAYCT
FPSRDDLLLFSPSLLGGPSPPSTAPGGSGAGEERMPPSLQERVPRDWDPQPLGPPTPGVPDLVDFQPPPE
LVLREAGEEVPDAGPREGVSFPWSRPPGQGEFRALNARLPLNTDAYLSLQELQGQDPTHLV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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