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Report for CCDS13966.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13966.1 Public Homo sapiens 22 SLC16A8 24 110 108 CCDS HistoryNCBI Gene:23539Re-query CCDS DB by CCDS ID:13966.1Re-query CCDS DB by GeneID:23539See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13966.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320521.10 ENSP00000321735.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000320521.10Link to Ensembl Protein Viewer:ENSP00000321735.5Re-query CCDS DB by Nucleotide ID:ENST00000320521Re-query CCDS DB by Protein ID:ENSP00000321735
Original member Current member EBI ENST00000681075.2 ENSP00000506669.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000681075.2Link to Ensembl Protein Viewer:ENSP00000506669.1Re-query CCDS DB by Nucleotide ID:ENST00000681075Re-query CCDS DB by Protein ID:ENSP00000506669
Original member Current member NCBI NM_013356.3 NP_037488.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_013356.3Link to Protein Sequence:NP_037488.2Re-query CCDS DB by Nucleotide ID:NM_013356Re-query CCDS DB by Protein ID:NP_037488Link to BLAST:NP_037488.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_037488.2 504 O95907 504 100% 0 0

Chromosomal Locations for CCDS 13966.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 38078388 38078704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38080840 38081679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38081889 38082032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 38082660 38082873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGGGCGCTGGCGGCCCCCGGCGGGGCGAGGGCCCCCCAGACGGCGGCTGGGGCTGGGTGGTGCTGGGCG
CCTGCTTTGTGGTCACCGGCTTCGCCTACGGCTTCCCCAAAGCCGTGAGCGTCTTCTTCCGCGCGCTCAT
GCGCGACTTCGACGCCGGCTACAGCGACACGGCCTGGGTGTCCTCCATCATGCTAGCCATGCTCTACGGC
ACGGGCCCCGTGTCCAGCATCCTCGTGACCCGCTTTGGCTGTCGCCCGGTGATGCTGGCGGGTGGGCTGC
TGGCTTCCGCGGGCATGATCCTAGCTTCCTTTGCCACGCGCCTCCTGGAGCTCTACCTGACCGCTGGGGT
GCTCACAGGCCTGGGCCTGGCCCTCAACTTCCAGCCGTCGCTCATCATGCTGGGGCTGTACTTCGAGCGG
CGGCGGCCTCTGGCCAACGGGCTGGCGGCGGCGGGCAGCCCCGTGTTCCTGTCCGCGCTGTCGCCGCTCG
GCCAGCAGCTGCTGGAGCGCTTCGGCTGGCGCGGCGGCTTCCTGCTGCTCGGCGGGCTCCTGCTGCACTG
CTGCGCCTGCGGGGCTGTCATGAGGCCGCCGCCCGGGCCGGGCCCGCGACCGCGCAGGGACAGCGCCGGC
GACCGCGCCGGGGACGCTCCGGGCGAGGCGGAGGCTGACGGTGCGGGGCTGCAGCTGCGCGAGGCATCCC
CCAGGGTCCGGCCCCGCCGGCGCCTGCTGGACTTGGCAGTGTGCACCGACCGCGCCTTCGCCGTGTACGC
CGTCACCAAGTTCCTGATGGCGCTCGGGCTCTTCGTCCCCGCCATCCTGCTGGTGAACTACGCCAAGGAC
GCGGGCGTGCCCGACACCGACGCCGCCTTCCTGCTGTCCATCGTGGGCTTCGTGGACATCGTGGCGCGCC
CGGCGTGCGGCGCCCTGGCGGGCCTGGCGCGTCTGCGGCCGCACGTCCCGTATCTGTTCAGCCTGGCCCT
GCTGGCCAATGGGCTCACAGACCTGAGCAGCGCACGCGCGCGCTCCTACGGCGCCCTCGTCGCCTTCTGC
GTCGCCTTCGGCCTCTCCTACGGCATGGTGGGCGCGCTGCAGTTCGAGGTGCTCATGGCGGCTGTGGGCG
CGCCCCGCTTCCCCAGTGCGCTGGGCCTGGTGTTGCTCGTGGAGGCCGCGGCTGTGCTCATCGGACCGCC
CTCTGCCGGCCGCCTGGTGGATGTGTTGAAGAACTATGAGATCATCTTCTACCTGGCCGGCTCTGAGGTG
GCCCTGGCTGGGGTCTTCATGGCTGTCGCCACCAACTGCTGCCTGCGTTGTGCTAAAGCTGCCCCGTCAG
GCCCAGGCACTGAGGGCGGAGCCAGTGACACTGAGGACGCTGAGGCTGAAGGGGACTCTGAGCCCCTGCC
TGTTGTTGCAGAGGAACCCGGCAACCTGGAGGCCCTGGAGGTGCTCAGCGCCCGGGGCGAGCCCACAGAA
CCAGAAATAGAGGCGAGGCCGAGGCTGGCTGCCGAGTCTGTATAA

Translation (504 aa):
MGAGGPRRGEGPPDGGWGWVVLGACFVVTGFAYGFPKAVSVFFRALMRDFDAGYSDTAWVSSIMLAMLYG
TGPVSSILVTRFGCRPVMLAGGLLASAGMILASFATRLLELYLTAGVLTGLGLALNFQPSLIMLGLYFER
RRPLANGLAAAGSPVFLSALSPLGQQLLERFGWRGGFLLLGGLLLHCCACGAVMRPPPGPGPRPRRDSAG
DRAGDAPGEAEADGAGLQLREASPRVRPRRRLLDLAVCTDRAFAVYAVTKFLMALGLFVPAILLVNYAKD
AGVPDTDAAFLLSIVGFVDIVARPACGALAGLARLRPHVPYLFSLALLANGLTDLSSARARSYGALVAFC
VAFGLSYGMVGALQFEVLMAAVGAPRFPSALGLVLLVEAAAVLIGPPSAGRLVDVLKNYEIIFYLAGSEV
ALAGVFMAVATNCCLRCAKAAPSGPGTEGGASDTEDAEAEGDSEPLPVVAEEPGNLEALEVLSARGEPTE
PEIEARPRLAAESV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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