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Report for CCDS14018.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14018.1 Public Homo sapiens 22 POLR3H 24 110 108 CCDS HistoryNCBI Gene:171568Re-query CCDS DB by CCDS ID:14018.1Re-query CCDS DB by GeneID:171568See the combined annotation on chromosome 22 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14018.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355209.9 ENSP00000347345.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355209.9Link to Ensembl Protein Viewer:ENSP00000347345.4Re-query CCDS DB by Nucleotide ID:ENST00000355209Re-query CCDS DB by Protein ID:ENSP00000347345
Original member Current member EBI ENST00000396504.6 ENSP00000379761.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396504.6Link to Ensembl Protein Viewer:ENSP00000379761.2Re-query CCDS DB by Nucleotide ID:ENST00000396504Re-query CCDS DB by Protein ID:ENSP00000379761
Original member Current member EBI ENST00000407461.5 ENSP00000385315.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000407461.5Link to Ensembl Protein Viewer:ENSP00000385315.1Re-query CCDS DB by Nucleotide ID:ENST00000407461Re-query CCDS DB by Protein ID:ENSP00000385315
Original member Current member NCBI NM_001018050.4 NP_001018060.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001018050.4Link to Protein Sequence:NP_001018060.1Re-query CCDS DB by Nucleotide ID:NM_001018050Re-query CCDS DB by Protein ID:NP_001018060Link to BLAST:NP_001018060.1
Original member Current member NCBI NM_001282884.2 NP_001269813.1 Accepted alive Link to Nucleotide Sequence:NM_001282884.2Link to Protein Sequence:NP_001269813.1Re-query CCDS DB by Nucleotide ID:NM_001282884Re-query CCDS DB by Protein ID:NP_001269813Link to BLAST:NP_001269813.1
Original member Current member NCBI NM_001282885.2 NP_001269814.1 Accepted alive Link to Nucleotide Sequence:NM_001282885.2Link to Protein Sequence:NP_001269814.1Re-query CCDS DB by Nucleotide ID:NM_001282885Re-query CCDS DB by Protein ID:NP_001269814Link to BLAST:NP_001269814.1
Original member Current member NCBI NM_138338.5 NP_612211.1 Accepted alive Link to Nucleotide Sequence:NM_138338.5Link to Protein Sequence:NP_612211.1Re-query CCDS DB by Nucleotide ID:NM_138338Re-query CCDS DB by Protein ID:NP_612211Link to BLAST:NP_612211.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001018060.1 204 Q9Y535-1 204 100% 0 0
NP_001269813.1 204 Q9Y535-1 204 100% 0 0
NP_001269814.1 204 Q9Y535-1 204 100% 0 0
NP_612211.1 204 Q9Y535-1 204 100% 0 0

Chromosomal Locations for CCDS 14018.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 22 (NC_000022.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22See the combined annotation on chromosome 22 in Sequence Viewer

Chromosome Start Stop Links
22 41529283 41529336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41530687 41530888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41532094 41532157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41532659 41532745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41540699 41540795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22
22 41543991 41544101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 22Link to Ensembl Genome Browser on chromosome 22

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGTTCGTCCTGGTGGAAATGGTGGACACCGTCCGGATCCCCCCTTGGCAGTTTGAGAGGAAGCTCAACG
ACTCCATTGCCGAGGAGCTGAACAAGAAGTTGGCCAACAAGGTCGTGTACAACGTGGGACTCTGCATTTG
TCTGTTTGATATCACCAAACTGGAGGATGCCTATGTATTCCCTGGGGATGGCGCATCACACACCAAAGTC
CATTTTCGCTGCGTGGTGTTTCATCCATTCCTAGATGAGATTCTCATTGGGAAGATCAAAGGCTGCAGCC
CAGAAGGAGTGCACGTCTCTCTAGGCTTCTTCGATGACATTCTCATCCCCCCAGAGTCACTGCAGCAGCC
AGCCAAGTTCGACGAAGCGGAGCAGGTGTGGGTGTGGGAGTACGAGACGGAGGAAGGAGCACACGACCTC
TACATGGACACCGGCGAGGAGATCCGCTTCCGGGTGGTGGACGAGAGCTTTGTTGACACGTCCCCCACAG
GGCCCAGCTCAGCAGATGCCACCACTTCCAGTGAGGAGCTGCCAAAGAAGGAGGCTCCGTACACGCTTGT
GGGATCCATCAGTGAGCCAGGCCTGGGCCTTCTCTCCTGGTGGACCAGCAACTAG

Translation (204 aa):
MFVLVEMVDTVRIPPWQFERKLNDSIAEELNKKLANKVVYNVGLCICLFDITKLEDAYVFPGDGASHTKV
HFRCVVFHPFLDEILIGKIKGCSPEGVHVSLGFFDDILIPPESLQQPAKFDEAEQVWVWEYETEEGAHDL
YMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKKEAPYTLVGSISEPGLGLLSWWTSN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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