NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14141.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14141.1 Public Homo sapiens X ARHGAP6 24 110 108 CCDS HistoryNCBI Gene:395Re-query CCDS DB by CCDS ID:14141.1Re-query CCDS DB by GeneID:395See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14141.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303025.10 ENSP00000302312.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000303025.10Link to Ensembl Protein Viewer:ENSP00000302312.6Re-query CCDS DB by Nucleotide ID:ENST00000303025Re-query CCDS DB by Protein ID:ENSP00000302312
Original member Current member EBI ENST00000380736.5 ENSP00000370112.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380736.5Link to Ensembl Protein Viewer:ENSP00000370112.1Re-query CCDS DB by Nucleotide ID:ENST00000380736Re-query CCDS DB by Protein ID:ENSP00000370112
Original member Current member NCBI NM_013423.3 NP_038267.1 Accepted alive Link to Nucleotide Sequence:NM_013423.3Link to Protein Sequence:NP_038267.1Re-query CCDS DB by Nucleotide ID:NM_013423Re-query CCDS DB by Protein ID:NP_038267Link to BLAST:NP_038267.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038267.1 771 O43182-4 771 100% 0 0

Chromosomal Locations for CCDS 14141.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 11138863 11139530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11142233 11142313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11143980 11144248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11156529 11156626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11169505 11169684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11178100 11178248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11179302 11179452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11182063 11182118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11186236 11186431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11188728 11188984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11196925 11196996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 11254548 11254686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2316 nt):
ATGTCAGGCCGCAGTGTACGGCTGAGGTCAGTCCCCATCCAGAGTCTCTCAGAGCTGGAGAGGGCCCGGC
TGCAGGAAGTGGCTTTTTATCAGTTGCAACAGGACTGTGACCTGAGCTGTCAGATCACCATTCCCAAAGA
TGGACAAAAGAGAAAGAAATCTTTAAGAAAGAAACTGGATTCACTAGGAAAGGAGAAAAACAAAGACAAA
GAATTCATCCCACAGGCATTTGGAATGCCCTTATCCCAAGTCATTGCGAATGACAGGGCCTATAAACTCA
AGCAGGACTTGCAGAGGGACGAGCAGAAAGATGCATCTGACTTTGTGGCTTCCCTCCTCCCATTTGGAAA
TAAAAGACAAAACAAAGAACTCTCAAGCAGTAACTCATCTCTCAGCTCAACCTCAGAAACACCGAATGAG
TCAACGTCCCCAAACACCCCGGAACCGGCTCCTCGGGCTAGGAGGAGGGGTGCCATGTCAGTGGATTCTA
TCACCGATCTTGATGACAATCAGTCTCGACTACTAGAAGCTTTACAACTTTCCTTGCCTGCTGAGGCTCA
AAGTAAAAAGGAAAAAGCCAGAGATAAGAAACTCAGTCTGAATCCTATTTACAGACAGGTCCCTAGGCTG
GTGGACAGCTGCTGTCAGCACCTAGAAAAACATGGCCTCCAGACAGTGGGGATATTCCGAGTTGGAAGCT
CAAAAAAGAGAGTGAGACAATTACGTGAGGAATTTGACCGTGGGATTGATGTCTCTCTGGAGGAGGAGCA
CAGTGTTCATGATGTGGCAGCCTTGCTGAAAGAGTTCCTGAGGGACATGCCAGACCCCCTTCTCACCAGG
GAGCTGTACACAGCTTTCATCAACACTCTCTTGTTGGAGCCGGAGGAACAGCTGGGCACCTTGCAGCTCC
TCATATACCTTCTACCTCCCTGCAACTGCGACACCCTCCACCGCCTGCTACAGTTCCTCTCCATCGTGGC
CAGGCATGCCGATGACAACATCAGCAAAGATGGGCAAGAGGTCACTGGGAATAAAATGACATCTCTAAAC
TTAGCCACCATATTTGGACCCAACCTGCTGCACAAGCAGAAGTCATCAGACAAAGAATTCTCAGTTCAGA
GTTCAGCCCGGGCTGAGGAGAGCACGGCCATCATCGCTGTTGTGCAAAAGATGATTGAAAATTATGAAGC
CCTGTTCATGGTTCCCCCAGATCTCCAGAACGAAGTGCTGATCAGCCTGTTAGAGACCGATCCTGATGTC
GTGGACTATTTACTCAGAAGAAAGGCTTCCCAATCATCAAGCCCTGACATGCTGCAGTCGGAAGTTTCCT
TTTCCGTGGGAGGGAGGCATTCATCTACAGACTCCAACAAGGCCTCCAGCGGAGACATCTCCCCTTATGA
CAACAACTCCCCAGTGCTGTCTGAGCGCTCCCTGCTGGCTATGCAAGAGGACGCGGCCCCGGGGGGCTCG
GAGAAGCTTTACAGAGTGCCAGGGCAGTTTATGCTGGTGGGCCACTTGTCGTCGTCAAAGTCAAGGGAAA
GTTCTCCTGGACCAAGGCTTGGGAAAGATCTGTCAGAGGAGCCTTTCGATATCTGGGGAACTTGGCATTC
AACATTAAAAAGCGGATCCAAAGACCCAGGAATGACAGGTTCCTCTGGAGACATTTTTGAAAGCAGCTCC
CTAAGAGCGGGGCCCTGCTCCCTTTCTCAAGGGAACCTGTCCCCAAATTGGCCTCGGTGGCAGGGGAGCC
CCGCAGAGCTGGACAGCGACACGCAGGGGGCTCGGAGGACTCAGGCCGCAGCCCCCGCGACGGAGGGCAG
GGCCCACCCTGCGGTGTCGCGCGCCTGCAGCACGCCCCACGTCCAGGTGGCAGGGAAAGCCGAGCGGCCC
ACGGCCAGGTCGGAGCAGTACTTGACCCTGAGCGGCGCCCACGACCTCAGCGAGAGTGAGCTGGATGTGG
CCGGGCTGCAGAGCCGGGCCACACCTCAGTGCCAAAGACCCCATGGGAGTGGGAGGGATGACAAGCGGCC
CCCGCCTCCATACCCGGGCCCAGGGAAGCCCGCGGCAGCGGCAGCCTGGATCCAGGGGCCCCCGGAAGGC
GTGGAGACACCCACGGACCAGGGAGGCCAAGCAGCCGAGCGAGAGCAGCAGGTCACGCAGAAAAAACTGA
GCAGCGCCAACTCCCTGCCAGCGGGCGAGCAGGACAGTCCGCGCCTGGGGGACGCTGGCTGGCTCGACTG
GCAGAGAGAGCGCTGGCAGATCTGGGAGCTCCTGTCGACCGACAACCCCGATGCCCTGCCCGAGACGCTG
GTCTGA

Translation (771 aa):
MSGRSVRLRSVPIQSLSELERARLQEVAFYQLQQDCDLSCQITIPKDGQKRKKSLRKKLDSLGKEKNKDK
EFIPQAFGMPLSQVIANDRAYKLKQDLQRDEQKDASDFVASLLPFGNKRQNKELSSSNSSLSSTSETPNE
STSPNTPEPAPRARRRGAMSVDSITDLDDNQSRLLEALQLSLPAEAQSKKEKARDKKLSLNPIYRQVPRL
VDSCCQHLEKHGLQTVGIFRVGSSKKRVRQLREEFDRGIDVSLEEEHSVHDVAALLKEFLRDMPDPLLTR
ELYTAFINTLLLEPEEQLGTLQLLIYLLPPCNCDTLHRLLQFLSIVARHADDNISKDGQEVTGNKMTSLN
LATIFGPNLLHKQKSSDKEFSVQSSARAEESTAIIAVVQKMIENYEALFMVPPDLQNEVLISLLETDPDV
VDYLLRRKASQSSSPDMLQSEVSFSVGGRHSSTDSNKASSGDISPYDNNSPVLSERSLLAMQEDAAPGGS
EKLYRVPGQFMLVGHLSSSKSRESSPGPRLGKDLSEEPFDIWGTWHSTLKSGSKDPGMTGSSGDIFESSS
LRAGPCSLSQGNLSPNWPRWQGSPAELDSDTQGARRTQAAAPATEGRAHPAVSRACSTPHVQVAGKAERP
TARSEQYLTLSGAHDLSESELDVAGLQSRATPQCQRPHGSGRDDKRPPPPYPGPGKPAAAAAWIQGPPEG
VETPTDQGGQAAEREQQVTQKKLSSANSLPAGEQDSPRLGDAGWLDWQRERWQIWELLSTDNPDALPETL
V


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH