NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS14293.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14293.1 Public Homo sapiens X SLC38A5 24 110 108 CCDS HistoryNCBI Gene:92745Re-query CCDS DB by CCDS ID:14293.1Re-query CCDS DB by GeneID:92745See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14293.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000595796.5 ENSP00000471683.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000595796.5Link to Ensembl Protein Viewer:ENSP00000471683.1Re-query CCDS DB by Nucleotide ID:ENST00000595796Re-query CCDS DB by Protein ID:ENSP00000471683
Original member Current member EBI ENST00000620913.5 ENSP00000481291.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000620913.5Link to Ensembl Protein Viewer:ENSP00000481291.1Re-query CCDS DB by Nucleotide ID:ENST00000620913Re-query CCDS DB by Protein ID:ENSP00000481291
Original member Current member NCBI NM_033518.4 NP_277053.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033518.4Link to Protein Sequence:NP_277053.2Re-query CCDS DB by Nucleotide ID:NM_033518Re-query CCDS DB by Protein ID:NP_277053Link to BLAST:NP_277053.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_277053.2 472 Q8WUX1-1 472 100% 0 0

Chromosomal Locations for CCDS 14293.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome X (NC_000023.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 48458933 48459034 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48459536 48459639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48459732 48459876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48460649 48460764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48460986 48461086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48461718 48461797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48462007 48462144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48462233 48462291 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48462898 48462980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48466015 48466093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48466230 48466322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48466799 48466872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48466962 48467077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48467710 48467785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 48467872 48467924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1419 nt):
ATGGAACTGCAGGATCCAAAGATGAATGGAGCCCTCCCTTCGGATGCTGTGGGCTACAGGCAAGAACGTG
AGGGCTTCCTGCCCAGTCGTGGTCCTGCTCCTGGGAGCAAGCCGGTCCAGTTCATGGATTTCGAGGGGAA
GACATCGTTTGGAATGTCAGTGTTCAACCTCAGCAACGCCATCATGGGCAGCGGCATCCTGGGGCTGGCC
TATGCCATGGCCCACACGGGGGTCATCTTCTTCCTGGCCCTGCTGCTGTGCATTGCGCTTCTGTCGTCCT
ACTCCATCCACCTCCTGCTGACCTGTGCTGGTATTGCAGGCATCCGAGCCTATGAGCAGCTGGGACAGAG
GGCATTCGGGCCTGCGGGGAAGGTAGTGGTGGCCACAGTCATCTGTCTGCACAATGTTGGGGCCATGTCC
AGTTACCTGTTCATCATCAAATCTGAGCTCCCCCTGGTTATCGGCACCTTCCTGTACATGGACCCCGAGG
GGGACTGGTTCTTGAAGGGAAACCTCCTCATCATCATCGTCAGTGTGTTAATCATCCTGCCCCTCGCCCT
CATGAAACACTTGGGCTACCTGGGGTACACCAGTGGTCTCTCTCTGACCTGCATGCTGTTTTTCCTTGTT
TCGGTCATCTACAAGAAGTTCCAACTTGGCTGTGCTATAGGCCACAATGAAACAGCAATGGAGAGTGAAG
CTCTCGTGGGACTCCCCAGCCAAGGACTCAACAGCAGCTGTGAGGCCCAGATGTTCACAGTTGACTCACA
GATGTCCTACACAGTGCCCATTATGGCTTTTGCTTTTGTCTGCCACCCTGAGGTGCTGCCCATCTATACG
GAGCTCTGCCGGCCCTCCAAGCGCAGGATGCAGGCCGTGGCCAACGTGTCCATTGGGGCCATGTTCTGCA
TGTATGGGCTCACAGCAACCTTTGGATACCTCACCTTCTACAGCAGTGTGAAGGCGGAGATGCTGCACAT
GTACAGCCAGAAGGACCCGCTCATCCTCTGTGTGCGCCTGGCCGTGCTGCTCGCGGTGACCCTCACTGTG
CCAGTCGTGCTGTTCCCTATCCGCCGGGCCCTGCAGCAGCTGCTTTTCCCAGGCAAGGCCTTCAGCTGGC
CACGACATGTGGCCATAGCTCTGATCCTGCTTGTTTTGGTCAATGTCCTTGTCATCTGTGTGCCAACCAT
CCGGGATATCTTTGGAGTTATCGGGTCCACCTCAGCCCCCAGCCTCATCTTCATCCTCCCCAGCATCTTC
TACCTCCGCATTGTACCCTCTGAGGTGGAGCCTTTCTTATCCTGGCCCAAGATCCAGGCCCTGTGCTTTG
GAGTCCTGGGAGTCCTCTTCATGGCCGTCAGTCTAGGCTTTATGTTTGCCAACTGGGCCACAGGCCAGAG
CCGCATGTCTGGACACTGA

Translation (472 aa):
MELQDPKMNGALPSDAVGYRQEREGFLPSRGPAPGSKPVQFMDFEGKTSFGMSVFNLSNAIMGSGILGLA
YAMAHTGVIFFLALLLCIALLSSYSIHLLLTCAGIAGIRAYEQLGQRAFGPAGKVVVATVICLHNVGAMS
SYLFIIKSELPLVIGTFLYMDPEGDWFLKGNLLIIIVSVLIILPLALMKHLGYLGYTSGLSLTCMLFFLV
SVIYKKFQLGCAIGHNETAMESEALVGLPSQGLNSSCEAQMFTVDSQMSYTVPIMAFAFVCHPEVLPIYT
ELCRPSKRRMQAVANVSIGAMFCMYGLTATFGYLTFYSSVKAEMLHMYSQKDPLILCVRLAVLLAVTLTV
PVVLFPIRRALQQLLFPGKAFSWPRHVAIALILLVLVNVLVICVPTIRDIFGVIGSTSAPSLIFILPSIF
YLRIVPSEVEPFLSWPKIQALCFGVLGVLFMAVSLGFMFANWATGQSRMSGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH