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Report for CCDS1460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1460.1 Public Homo sapiens 1 PM20D1 24 110 108 CCDS HistoryNCBI Gene:148811Re-query CCDS DB by CCDS ID:1460.1Re-query CCDS DB by GeneID:148811See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1460.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000367136.5 ENSP00000356104.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000367136.5Link to Ensembl Protein Viewer:ENSP00000356104.4Re-query CCDS DB by Nucleotide ID:ENST00000367136Re-query CCDS DB by Protein ID:ENSP00000356104
Original member Current member NCBI NM_152491.5 NP_689704.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152491.5Link to Protein Sequence:NP_689704.4Re-query CCDS DB by Nucleotide ID:NM_152491Re-query CCDS DB by Protein ID:NP_689704Link to BLAST:NP_689704.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689704.4 502 Q6GTS8-1 502 100% 0 0

Chromosomal Locations for CCDS 1460.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 205828620 205828743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205830280 205830379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205832598 205832766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205840252 205840323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205841811 205841889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205842154 205842215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205842676 205842751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205843667 205843786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205844087 205844217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205844811 205844897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205845325 205845557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205847885 205847971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 205849904 205850072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGGCTCAGCGGTGCGTTTGCGTGCTGGCCCTGGTGGCTATGCTGCTCCTAGTTTTCCCTACCGTCTCCA
GATCGATGGGCCCGAGGAGCGGGGAGCATCAAAGGGCGTCGCGAATCCCTTCTCAGTTCAGCAAAGAGGA
ACGCGTCGCGATGAAAGAGGCGCTGAAAGGTGCCATCCAGATTCCAACAGTGACTTTTAGCTCTGAGAAG
TCCAATACTACAGCCCTGGCTGAGTTCGGAAAATACATTCATAAAGTCTTTCCTACAGTGGTCAGCACCA
GCTTTATCCAGCATGAAGTCGTGGAAGAGTATAGCCACCTGTTCACTATCCAAGGCTCGGACCCCAGCTT
GCAGCCCTACCTGCTGATGGCTCACTTTGATGTGGTGCCTGCCCCTGAAGAAGGCTGGGAGGTGCCCCCA
TTCTCTGGGTTGGAGCGTGATGGCATCATCTATGGTCGGGGCACACTGGACGACAAGAACTCTGTGATGG
CATTACTGCAGGCCTTGGAGCTCCTGCTGATCAGGAAGTACATCCCCCGAAGATCTTTCTTCATTTCTCT
GGGCCATGATGAGGAGTCATCAGGGACAGGGGCTCAGAGGATCTCAGCCCTGCTACAGTCAAGGGGCGTC
CAGCTAGCCTTCATTGTGGACGAGGGGGGCTTCATCTTGGATGATTTCATTCCTAACTTCAAGAAGCCCA
TCGCCTTGATTGCAGTCTCAGAGAAGGGTTCCATGAACCTCATGCTGCAAGTAAACATGACTTCAGGCCA
CTCTTCAGCTCCTCCAAAGGAGACAAGCATTGGCATCCTTGCAGCTGCTGTCAGCCGATTGGAGCAGACA
CCAATGCCTATCATATTTGGAAGCGGGACAGTGGTGACTGTATTGCAGCAACTGGCAAATGAGTTTCCCT
TCCCTGTCAATATAATCCTGAGCAACCCATGGCTATTTGAACCACTTATAAGCAGGTTTATGGAGAGAAA
TCCCTTAACCAATGCAATAATCAGGACCACCACGGCACTCACCATATTCAAAGCAGGGGTCAAGTTCAAT
GTCATCCCCCCAGTGGCCCAGGCCACAGTCAACTTCCGGATTCACCCTGGACAGACAGTCCAAGAGGTCC
TAGAACTCACGAAGAACATTGTGGCTGATAACAGAGTCCAGTTCCATGTGTTGAGTGCCTTTGACCCCCT
CCCCGTCAGCCCTTCTGATGACAAGGCCTTGGGCTACCAGCTGCTCCGCCAGACCGTACAGTCCGTCTTC
CCGGAAGTCAATATTACTGCCCCAGTTACTTCTATTGGCAACACAGACAGCCGATTCTTTACAAACCTCA
CCACTGGCATCTACAGGTTCTACCCCATCTACATACAGCCTGAAGACTTCAAACGCATCCATGGAGTCAA
CGAGAAAATCTCAGTCCAAGCCTATGAGACCCAAGTGAAATTCATCTTTGAGTTGATTCAGAATGCTGAC
ACAGACCAGGAGCCAGTTTCTCACCTGCACAAACTGTGA

Translation (502 aa):
MAQRCVCVLALVAMLLLVFPTVSRSMGPRSGEHQRASRIPSQFSKEERVAMKEALKGAIQIPTVTFSSEK
SNTTALAEFGKYIHKVFPTVVSTSFIQHEVVEEYSHLFTIQGSDPSLQPYLLMAHFDVVPAPEEGWEVPP
FSGLERDGIIYGRGTLDDKNSVMALLQALELLLIRKYIPRRSFFISLGHDEESSGTGAQRISALLQSRGV
QLAFIVDEGGFILDDFIPNFKKPIALIAVSEKGSMNLMLQVNMTSGHSSAPPKETSIGILAAAVSRLEQT
PMPIIFGSGTVVTVLQQLANEFPFPVNIILSNPWLFEPLISRFMERNPLTNAIIRTTTALTIFKAGVKFN
VIPPVAQATVNFRIHPGQTVQEVLELTKNIVADNRVQFHVLSAFDPLPVSPSDDKALGYQLLRQTVQSVF
PEVNITAPVTSIGNTDSRFFTNLTTGIYRFYPIYIQPEDFKRIHGVNEKISVQAYETQVKFIFELIQNAD
TDQEPVSHLHKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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