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Report for CCDS147.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
147.1 Public Homo sapiens 1 CFAP107 24 110 108 CCDS HistoryNCBI Gene:93190Re-query CCDS DB by CCDS ID:147.1Re-query CCDS DB by GeneID:93190See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 147.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000614859.5 ENSP00000477802.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000614859.5Link to Ensembl Protein Viewer:ENSP00000477802.1Re-query CCDS DB by Nucleotide ID:ENST00000614859Re-query CCDS DB by Protein ID:ENSP00000477802
Original member Current member NCBI NM_152290.4 NP_689503.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152290.4Link to Protein Sequence:NP_689503.3Re-query CCDS DB by Nucleotide ID:NM_152290Re-query CCDS DB by Protein ID:NP_689503Link to BLAST:NP_689503.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689503.3 194 Q8N1D5 194 100% 0 0

Chromosomal Locations for CCDS 147.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 12746431 12746541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12755700 12755813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12759310 12759487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 12760770 12760951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (585 nt):
ATGTTTTTGACTGCAGTAAATCCACAGCCACTCTCTACTCCGAGCTGGCAGATTGAGACCAAGTATTCAA
CGAAAGTGCTCACTGGAAATTGGATGGAAGAGAGGAGAAAGTTCACCAGAGACACTGACAAGACACCCCA
ATCCATTTACAGAAAAGAATACATCCCCTTCCCAGACCACAGACCAGACCAGATCTCCAGGTGGTATGGG
AAGAGGAAAGTTGAGGGGCTACCTTACAAACACCTGATCACCCACCACCAGGAGCCCCCACATCGCTACC
TGATCAGCACCTATGACGACCATTACAACCGGCATGGTTACAACCCGGGGCTGCCTCCACTCCGCACTTG
GAATGGACAGAAGTTGCTGTGGCTGCCAGAGAAGTCTGACTTTCCCCTTCTTGCTCCCCCTACAAACTAT
GGACTCTATGAGCAGCTCAAGCAGAGACAGCTCACACCCAAGGCTGGCCTGAAGCAGAGCACTTATACTT
CATCCTACCCCAGACCACCGTTGTGCGCTATGTCCTGGAGGGAGCATGCGGTCCCGGTCCCTCCCCATCG
CCTGCATCCTCTCCCACACTTCTGA

Translation (194 aa):
MFLTAVNPQPLSTPSWQIETKYSTKVLTGNWMEERRKFTRDTDKTPQSIYRKEYIPFPDHRPDQISRWYG
KRKVEGLPYKHLITHHQEPPHRYLISTYDDHYNRHGYNPGLPPLRTWNGQKLLWLPEKSDFPLLAPPTNY
GLYEQLKQRQLTPKAGLKQSTYTSSYPRPPLCAMSWREHAVPVPPHRLHPLPHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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