NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS14854.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14854.1 Public Mus musculus 1 Col19a1 23 108 98 CCDS HistoryNCBI Gene:12823Re-query CCDS DB by CCDS ID:14854.1Re-query CCDS DB by GeneID:12823See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14854.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115244.8 ENSMUSP00000110899.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115244.8Link to Ensembl Protein Viewer:ENSMUSP00000110899.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115244Re-query CCDS DB by Protein ID:ENSMUSP00000110899
Original member Current member NCBI NM_007733.2 NP_031759.2 Accepted alive Link to Nucleotide Sequence:NM_007733.2Link to Protein Sequence:NP_031759.2Re-query CCDS DB by Nucleotide ID:NM_007733Re-query CCDS DB by Protein ID:NP_031759Link to BLAST:NP_031759.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031759.2 1136 Q0VF58 1136 100% 0 0

Chromosomal Locations for CCDS 14854.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 24264690 24264817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24264965 24265042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24270366 24270494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24279932 24279998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24282417 24282587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24285053 24285097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24285254 24285289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24289667 24289729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24289828 24289872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24293072 24293116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24296760 24296813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24300593 24300619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24301275 24301319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24301400 24301450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24303456 24303500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24306260 24306313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24307646 24307699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24312047 24312100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24312312 24312365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24312448 24312552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24315398 24315439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24317392 24317445 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24317533 24317586 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24317690 24317725 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24322033 24322110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24322214 24322258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24322939 24323028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24323682 24323735 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24325250 24325303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24325979 24326032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24326131 24326166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24328036 24328071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24332430 24332492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24337898 24337939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24352282 24352335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24374583 24374636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24410196 24410249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24451762 24451797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24453744 24453797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24461476 24461529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24508184 24508228 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24510843 24510887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24525604 24525666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24526385 24526510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24529928 24530008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24534033 24534308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24536879 24537002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24559654 24559753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24561303 24561368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 24575333 24575423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3411 nt):
ATGAGGCACACTGGCTCTTGGAAATTGTGGACCTGGGTGACAACCTTCCTGCTTCCTGCATGTACCTGTC
TGACAGTCAGGGACAAGCCAGAAACAACCTGCCCTACACTGAGAACAGAGAGATATCAAGATGACAGAAA
CAAATCTGAATTGTCAGGCTTTGATCTGGGAGAAAGCTTTGCTCTGAGGCATGCGTTTTGCGAAGGTGAT
AAAACCTGTTTCAAGTTGGGAAGTGTGCTTCTTATCAGAGACACTGTTAAGATATTTCCCAAAGGCCTTC
CAGAGGAATACGCTATAGCTGTCATGTTTCGGGTACGAAGAAGCACCAAAAAGGAACGGTGGTTTTTATG
GAAGATTTTAAACCAGCAGAATATGGCCCAGATATCTGTAGTGATTGATGGTACGAAGAAGGTGGTAGAA
TTTATGTTCCGAGGTGCTGAGGGAGATCTGTTGAACTATGTTTTTAAGAATCGAGAACTCCGTCCACTCT
TTGATCGTCAATGGCATAAACTTGGCATTGGCGTGCAATCCCGAGTCCTTTCTCTCTATATGGATTGCAA
TTTAATTGCAAGTCGACACACGGAAGAAAAGAATTCTGTGGATTTTCAAGGAAGGACAATTATTGCTGCA
CGAGCTTCAGATGGCAAACCTGTGGATATCGAACTTCACCAACTTAGAATCTACTGCAATGCAAACTTCC
TAGCTGAAGAATCATGTTGCAACTTATCACCTACTAAGTGTCCAGAGCAAGACGACTTTGGAAGTACTAC
TTCATCCTGGGGGACCTCTAACACTGGTAAAATGTCTTCATATCTGCCAGGAAAGCAGGAACTTAAAGAC
ACATGCCAGTGTATTCCAAACAAGGAGGAAGCAGGATTACCAGGAACTCTCAGATCCATTGGACATAAGG
GCGACAAAGGAGAGCCGGGTGAACATGGCTTAGATGGTACTCCAGGATTACCTGGTCAAAAGGGAGAACA
AGGACTTGAAGGCATCAAGGGAGAAATTGGTGAAAAGGGTGAACCAGGAGCCAAAGGAGACTCTGGTCTG
GATGGCCTCAATGGACAAGATGGTTTGAAAGGTGACTCGGGTCCTCAAGGTCCACCTGGCCCAAAAGGAG
ACAAGGGTGATATGGGACCTCCAGGGCCACCAGCCTTAACTGGCTCCATAGGAATCCAAGGTCCCCAGGG
TCCACCTGGCAAAGAAGGCCAAAGGGGAAGACGAGGGAAAACAGGACCCCCAGGAAATCCAGGACCTCCA
GGACCACCCGGACCTCCTGGGTTACAAGGACTACAGCAGCCTTTTGGTGGATATTTCAATAAGGGAACTG
GTGAGCACGGAGCTAGTGGCCCCAAAGGAGAAAAGGGCGATACTGGGCTGCCTGGATTTCCAGGGTCTGT
TGGCCCTAAAGGACACAAAGGAGAACCTGGGGAGCCTTTAACAAAAGGTGAAAAGGGAGATAGAGGAGAA
CCCGGCCTATTAGGACCACAGGGAATAAAGGGGGAACCTGGAGATCCTGGTCCCCCTGGTTTACTAGGAA
GCCCAGGGCTAAAGGGTCAGCAAGGACCTGCAGGTTCCATGGGGCCCAGAGGACCACCAGGAGATGTTGG
ATTGCCAGGAGAACATGGTATTCCAGGAAAACAAGGCGTTAAGGGAGAAAAGGGAGATCCGGGTGGAAGG
CTAGGCCCTCCTGGACTTCCAGGTCTGAAGGGTGATGCTGGGCCTCCAGGGATAAGCCTGCCAGGGAAAC
CAGGGTTAGATGGAAATCCAGGATCACCTGGTCCACGTGGGCCAAAGGGTGAAAGAGGTCTGCCTGGGCT
CCACGGTTCCCCCGGGGACACAGGCCCACCAGGTGTAGGAATCCCTGGTAGAACAGGCTCCCAAGGACCA
GCCGGAGAGCCAGGTATTCAGGGTCCTCGAGGTCTGCCTGGATTGCCAGGAACTCCAGGGATGCCAGGGA
ATGACGGAGCTCCAGGGAAGGATGGAAAGCCAGGCCTTCCAGGCCCCCCAGGTGACCCGATCGCACTTCC
TCTCTTGGGAGACATTGGAGCCCTGCTGAAGAACTTCTGTGGCAACTGTCAAGCCAATGTCCCTGGGCTG
AAAAGCATCAAAGGCGATGACGGAAGCACTGGGGAGCCTGGAAAGTATGATCCTGCAGCCAGGAAGGGTG
ATGTAGGGCCACGAGGTCCTCCGGGATTCCCAGGCAGAGAAGGGCCAAAGGGAAGCAAAGGAGAGCGGGG
CTACCCTGGAATACACGGGGAGAAAGGCGATGAGGGTCTTCAAGGAATCCCTGGCCTCTCGGGAGCTCCT
GGCCCAACTGGACCCCCTGGCTTAACAGGAAGAACTGGACATCCTGGTCCCACTGGAGCAAAAGGTGACA
AGGGTAGTGAGGGACCCCCTGGGAAACCTGGACCTCCTGGACCCCCTGGTGTCCCGCTCAATGAGGGAAA
CGGCATGAGCAGTTTATATAAAATCCAGGGAGGGGTGAATGTTCCCGGTTACCCAGGACCTCCGGGCCCC
CCAGGTCCAAAAGGTGATCCTGGCCCAGTGGGAGAGCCTGGTGCAATGGGCTTGCCAGGACTAGAAGGAT
TTCCTGGTGTAAAGGGAGATCGAGGCCCAGCAGGCCCCCCAGGCATAGCCGGCATATCGGGAAAACCAGG
TGCCCCAGGCCCTCCAGGAGTACCAGGGGAGCAGGGTGAAAGAGGACCTATTGGAGATACAGGTTTTCCT
GGACCAGAGGGACCCTCGGGGAAGCCAGGCATAAATGGAAAAGATGGATTACCAGGTGCTCAGGGCATCA
TGGGTAAACCTGGCGACAGAGGCCCCAAAGGAGAACGCGGTGATCAGGGAATTCCAGGAGACAGAGGCCC
TCAAGGTGAACGTGGGAAGCCAGGTCTTACGGGCATGAAGGGGGCTATAGGCCCTGTGGGACCAGCAGGA
AGCAAGGGCTCCACTGGGCCACCTGGCCACCAAGGCCCTCCAGGCAATCCTGGCATCCCTGGCACTCCGG
CTGATGCTGTTTCATTTGAAGAAATAAAACACTACATTAATCAAGAAGTCCTAAGGATTTTTGAAGAGAG
GATGGCTGTGTTTCTATCCCAGCTTAAACTGCCAGCAGCAATGTTGTCTGCTCAAGCTCATGGAAGGCCT
GGCCCACCAGGGAAGGACGGGTTACCTGGACCCCCAGGAGATCCAGGGCCCCAAGGCTACCGAGGACAGA
AGGGAGAAAGAGGTGAACCTGGAATTGGGCTGCCGGGGAGTCCGGGTCTTCCTGGATCTTCAGCAGTGGG
TTTGCCGGGCTCACCAGGTGCCCCGGGGCCTCAAGGACCCCCGGGACCCAGTGGAAGATGTAATCCAGAA
GATTGCCTCTATCCTGCACCTCCTCCCCACCAGCAGGCAGGCGGGAAGTGA

Translation (1136 aa):
MRHTGSWKLWTWVTTFLLPACTCLTVRDKPETTCPTLRTERYQDDRNKSELSGFDLGESFALRHAFCEGD
KTCFKLGSVLLIRDTVKIFPKGLPEEYAIAVMFRVRRSTKKERWFLWKILNQQNMAQISVVIDGTKKVVE
FMFRGAEGDLLNYVFKNRELRPLFDRQWHKLGIGVQSRVLSLYMDCNLIASRHTEEKNSVDFQGRTIIAA
RASDGKPVDIELHQLRIYCNANFLAEESCCNLSPTKCPEQDDFGSTTSSWGTSNTGKMSSYLPGKQELKD
TCQCIPNKEEAGLPGTLRSIGHKGDKGEPGEHGLDGTPGLPGQKGEQGLEGIKGEIGEKGEPGAKGDSGL
DGLNGQDGLKGDSGPQGPPGPKGDKGDMGPPGPPALTGSIGIQGPQGPPGKEGQRGRRGKTGPPGNPGPP
GPPGPPGLQGLQQPFGGYFNKGTGEHGASGPKGEKGDTGLPGFPGSVGPKGHKGEPGEPLTKGEKGDRGE
PGLLGPQGIKGEPGDPGPPGLLGSPGLKGQQGPAGSMGPRGPPGDVGLPGEHGIPGKQGVKGEKGDPGGR
LGPPGLPGLKGDAGPPGISLPGKPGLDGNPGSPGPRGPKGERGLPGLHGSPGDTGPPGVGIPGRTGSQGP
AGEPGIQGPRGLPGLPGTPGMPGNDGAPGKDGKPGLPGPPGDPIALPLLGDIGALLKNFCGNCQANVPGL
KSIKGDDGSTGEPGKYDPAARKGDVGPRGPPGFPGREGPKGSKGERGYPGIHGEKGDEGLQGIPGLSGAP
GPTGPPGLTGRTGHPGPTGAKGDKGSEGPPGKPGPPGPPGVPLNEGNGMSSLYKIQGGVNVPGYPGPPGP
PGPKGDPGPVGEPGAMGLPGLEGFPGVKGDRGPAGPPGIAGISGKPGAPGPPGVPGEQGERGPIGDTGFP
GPEGPSGKPGINGKDGLPGAQGIMGKPGDRGPKGERGDQGIPGDRGPQGERGKPGLTGMKGAIGPVGPAG
SKGSTGPPGHQGPPGNPGIPGTPADAVSFEEIKHYINQEVLRIFEERMAVFLSQLKLPAAMLSAQAHGRP
GPPGKDGLPGPPGDPGPQGYRGQKGERGEPGIGLPGSPGLPGSSAVGLPGSPGAPGPQGPPGPSGRCNPE
DCLYPAPPPHQQAGGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH