NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS14965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
14965.1 Public Mus musculus 1 Satb2 23 108 98 CCDS HistoryNCBI Gene:212712Re-query CCDS DB by CCDS ID:14965.1Re-query CCDS DB by GeneID:212712See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 14965.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114415.9 ENSMUSP00000110057.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114415.9Link to Ensembl Protein Viewer:ENSMUSP00000110057.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114415Re-query CCDS DB by Protein ID:ENSMUSP00000110057
Original member NCBI NM_001358580.1 NP_001345509.1 Updated not alive Link to Nucleotide Sequence:NM_001358580.1Link to Protein Sequence:NP_001345509.1Re-query CCDS DB by Nucleotide ID:NM_001358580Re-query CCDS DB by Protein ID:NP_001345509
Current member NCBI NM_001358580.2 NP_001345509.1 Accepted alive Link to Nucleotide Sequence:NM_001358580.2Link to Protein Sequence:NP_001345509.1Re-query CCDS DB by Nucleotide ID:NM_001358580Re-query CCDS DB by Protein ID:NP_001345509Link to BLAST:NP_001345509.1
Original member NCBI NM_001358581.1 NP_001345510.1 Updated not alive Link to Nucleotide Sequence:NM_001358581.1Link to Protein Sequence:NP_001345510.1Re-query CCDS DB by Nucleotide ID:NM_001358581Re-query CCDS DB by Protein ID:NP_001345510
Current member NCBI NM_001358581.2 NP_001345510.1 Accepted alive Link to Nucleotide Sequence:NM_001358581.2Link to Protein Sequence:NP_001345510.1Re-query CCDS DB by Nucleotide ID:NM_001358581Re-query CCDS DB by Protein ID:NP_001345510Link to BLAST:NP_001345510.1
Original member NCBI NM_139146.2 NP_631885.1 Updated not alive Link to Nucleotide Sequence:NM_139146.2Link to Protein Sequence:NP_631885.1Re-query CCDS DB by Nucleotide ID:NM_139146Re-query CCDS DB by Protein ID:NP_631885
Current member NCBI NM_139146.3 NP_631885.1 Accepted alive Link to Nucleotide Sequence:NM_139146.3Link to Protein Sequence:NP_631885.1Re-query CCDS DB by Nucleotide ID:NM_139146Re-query CCDS DB by Protein ID:NP_631885Link to BLAST:NP_631885.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345509.1 733 Q8VI24-1 733 100% 0 0
NP_001345510.1 733 Q8VI24-1 733 100% 0 0
NP_631885.1 733 Q8VI24-1 733 100% 0 0

Chromosomal Locations for CCDS 14965.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 56796783 56797244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56831439 56831636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56845576 56845731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56850171 56850383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56871312 56871784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56891163 56891265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56897946 56898069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56898991 56899117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56948079 56948255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 56969653 56969821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2202 nt):
ATGGAGCGGCGGAGCGAGAGCCCGTGTCTTCGGGACAGCCCCGACCGAAGAAGCGGCAGCCCCGACGTCA
AGGGGCCTCCCCCGGTGAAGGTGGCCCGGCTGGAGCAGAACGGCAGCCCCATGGGAGCCCGCGGGAGGCC
CAACGGCGCCGTGGCCAAGGCCGTGGGAGGTTTGATGATTCCAGTTTTCTGTGTGGTGGAGCAGTTGGAT
GGCTCTCTTGAATACGACAACCGAGAAGAGCACGCTGAGTTCGTCTTGGTGCGGAAAGATGTGCTTTTTA
GCCAGCTGGTGGAGACCGCGCTCCTGGCCCTGGGGTATTCCCACAGCTCTGCAGCGCAGGCCCAAGGAAT
AATCAAGCTAGGGAGGTGGAACCCCCTCCCCCTCAGTTATGTGACAGACGCCCCTGATGCGACTGTGGCC
GACATGCTGCAAGATGTCTATCACGTTGTGACGCTGAAGATCCAATTACAAAGTTGTTCAAAGTTGGAAG
ACTTGCCTGCGGAGCAATGGAACCACGCCACCGTCCGCAATGCCTTAAAGGAACTGCTCAAAGAAATGAA
CCAGAGCACATTAGCCAAAGAATGCCCTCTCTCCCAGAGTATGATTTCATCCATTGTAAATAGCACATAC
TATGCCAATGTGTCAGCAACCAAGTGCCAGGAGTTTGGGAGATGGTACAAAAAGTATAAGAAGATAAAAG
TGGAAAGAGTGGAGCGAGAGAACCTTTCAGACTATTGTGTTCTGGGCCAGCGGCCAATGCATTTACCAAA
TATGAACCAGCTGGCATCCCTGGGCAAAACCAACGAACAGTCTCCTCATAGCCAAATCCACCACAGTACT
CCAATCCGAAACCAAGTGCCCGCACTCCAGCCCATCATGAGCCCTGGTCTTCTCTCACCGCAGCTCAGTC
CTCAGCTTGTCAGGCAGCAAATAGCCATGGCCCATCTGATAAACCAACAGATAGCCGTTAGCCGACTCCT
GGCTCACCAGCATCCTCAAGCCATCAACCAGCAGTTCTTGAACCACCCACCCATTCCCAGAGCAGTTAAG
CCAGAGCCAACAAACTCCTCTGTGGAAGTCTCTCCTGATATCTACCAGCAAGTTAGAGATGAGTTGAAGA
GGGCTAGTGTGTCTCAAGCTGTCTTTGCAAGAGTGGCATTCAACCGCACACAGGGATTATTGTCAGAGAT
ACTGCGTAAGGAAGAAGATCCCAGGACTGCGTCTCAGTCTCTTCTAGTAAACCTGAGGGCCATGCAGAAC
TTCCTCAACCTGCCTGAAGTGGAGCGTGATCGCATTTACCAGGATGAGCGAGAGAGGAGCATGAACCCCA
ATGTGAGCATGGTCTCCTCTGCCTCTAGCAGTCCCAGCTCCTCCCGAACCCCACAGGCCAAAACCTCGAC
ACCGACAACAGACCTCCCTATTAAGGTGGACGGCGCCAACGTCAACATCACAGCTGCCATTTATGACGAG
ATCCAACAGGAGATGAAAAGAGCCAAGGTGTCTCAAGCCCTGTTTGCCAAAGTGGCTGCAAACAAAAGTC
AGGGCTGGCTTTGCGAACTGCTTCGTTGGAAGGAGAACCCCAGCCCAGAAAACCGCACCCTTTGGGAGAA
TCTCTGCACCATCCGCCGTTTCCTGAATCTTCCCCAACATGAGCGGGATGTGATCTATGAGGAAGAATCT
CGACATCACCACAGTGAACGCATGCAGCATGTGGTCCAGCTCCCACCTGAGCCCGTGCAGGTCCTTCATC
GACAGCAGTCCCAGCCAACTAAGGAGAGCTCCCCTCCCAGAGAAGAAGCACCCCCACCGCCTCCTCCAAC
AGAAGACAGCTGTGCCAAAAAGCCTCGGTCTCGCACAAAGATCTCTTTGGAAGCCCTGGGCATCCTTCAA
AGCTTCATCCATGATGTAGGCCTCTATCCCGACCAGGAAGCCATCCACACACTCTCCGCCCAGCTGGATC
TCCCCAAACACACCATCATCAAGTTCTTCCAGAACCAGAGGTACCACGTGAAGCACCATGGCAAGCTGAA
GGAGCACCTGGGCTCCGCCGTGGACGTGGCAGAGTATAAGGACGAGGAGCTGCTGACCGAGTCCGAGGAG
AATGACAGTGAGGAAGGCTCGGAGGAGATGTACAAGGTGGAGGCCGAGGAAGAGAATGCCGACAAGAGCA
AGGCTGCACCGGCCGAAACCGACCAGAGATAA

Translation (733 aa):
MERRSESPCLRDSPDRRSGSPDVKGPPPVKVARLEQNGSPMGARGRPNGAVAKAVGGLMIPVFCVVEQLD
GSLEYDNREEHAEFVLVRKDVLFSQLVETALLALGYSHSSAAQAQGIIKLGRWNPLPLSYVTDAPDATVA
DMLQDVYHVVTLKIQLQSCSKLEDLPAEQWNHATVRNALKELLKEMNQSTLAKECPLSQSMISSIVNSTY
YANVSATKCQEFGRWYKKYKKIKVERVERENLSDYCVLGQRPMHLPNMNQLASLGKTNEQSPHSQIHHST
PIRNQVPALQPIMSPGLLSPQLSPQLVRQQIAMAHLINQQIAVSRLLAHQHPQAINQQFLNHPPIPRAVK
PEPTNSSVEVSPDIYQQVRDELKRASVSQAVFARVAFNRTQGLLSEILRKEEDPRTASQSLLVNLRAMQN
FLNLPEVERDRIYQDERERSMNPNVSMVSSASSSPSSSRTPQAKTSTPTTDLPIKVDGANVNITAAIYDE
IQQEMKRAKVSQALFAKVAANKSQGWLCELLRWKENPSPENRTLWENLCTIRRFLNLPQHERDVIYEEES
RHHHSERMQHVVQLPPEPVQVLHRQQSQPTKESSPPREEAPPPPPPTEDSCAKKPRSRTKISLEALGILQ
SFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHHGKLKEHLGSAVDVAEYKDEELLTESEE
NDSEEGSEEMYKVEAEEENADKSKAAPAETDQR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH