NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15017.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15017.1 Public Mus musculus 1 Pth2r 23 108 98 CCDS HistoryNCBI Gene:213527Re-query CCDS DB by CCDS ID:15017.1Re-query CCDS DB by GeneID:213527See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15017.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027083.6 ENSMUSP00000027083.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027083.6Link to Ensembl Protein Viewer:ENSMUSP00000027083.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000027083Re-query CCDS DB by Protein ID:ENSMUSP00000027083
Original member Current member NCBI NM_139270.2 NP_644676.1 Accepted alive Link to Nucleotide Sequence:NM_139270.2Link to Protein Sequence:NP_644676.1Re-query CCDS DB by Nucleotide ID:NM_139270Re-query CCDS DB by Protein ID:NP_644676Link to BLAST:NP_644676.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_644676.1 546 Q91V95 546 100% 0 0

Chromosomal Locations for CCDS 15017.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 65311596 65311670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65321969 65322071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65336748 65336858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65336974 65337089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65343480 65343577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65345307 65345496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65346813 65346966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65351536 65351596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65363252 65363315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65372278 65372372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65383863 65384001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65386301 65386342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 65388418 65388810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1641 nt):
ATGGCCTGGCTGGAGACTTTCACCTACATTTGTGGATGGCTGATTCTCAGTAGCTGTCTCCTGGTTAGAG
CGCAGCTGGATTCTGACGGCACCATCACTATAGAAGAGCAGATTGTTCTTGTTATGAAGGCTAAAATGCA
GTGTGAACTTAACATCACAGCCCAGCTCCAAGAAGGAGAAGGCAATTGCTTCCCAGAATGGGATGGGATC
ATTTGTTGGCCCAGAGGAACAGTGGGGAAAATGTCAGCTGTGCCTTGCCCTCCGTATGTTTACGACTTCA
ATCATAAAGGAGTTGCTTTCCGGCACTGCACCCCCAATGGGACGTGGGATTCTATTCATGGCTCAAATAA
AACCTGGGCTAACTATTCAGACTGCTTTCTGCAGCCTGATATCAACATAGGAAAGCAAGAGTTCTTTGAA
AGCCTCTACATCCTGTACACTGTTGGCTACTCCATCTCTTTTGGCTCCTTGGCTGTAGCCATTCTCATTA
TTGGCTACTTCAGGCGATTGCATTGCACGAGGAACTATATCCATTTGCATTTGTTCGTGTCCTTCATGCT
GAGAGCCATGAGCATCTTTGTCAAGGACAGAGTAGCCCAGGCTCACCTGGGAGTAGAGGCACTGCAGTCT
CTGGTGATGCAGGGTGACCTTCAGAACTTCATTGGAGGACCATCTGTGGACAAATCTCAGTATGTGGGGT
GCAAGATCGCTGTCGTGATGTTTATTTATTTCTTGGCTACAAACTATTACTGGATCCTGGTGGAAGGGCT
CTACCTGCACAACTTAATCTTTGTGTCTTTCTTTTCCGACACCAAATACCTGTGGGGCTTCATCTCGATA
GGCTGGGGATTTCCAGCAGTATTTGTTGTGGCCTGGGCAGTGGCACGAGCCACTCTGGCGGATACCAGGT
GTTGGGAACTTAGTGCTGGAGACAGGTGGATTTACCAGGCTCCGATCTTAGCTGCTATTGGGCTGAATTT
TATTCTGTTCCTGAATACAGTTAGAGTTCTTGCTACCAAAATTTGGGAAACCAATGCGGTTGGGCATGAC
ATGAGAAAGCAGTACAGGAAACTGGCTAAGTCAACACTGGTCCTGGTGCTGGTATTTGGCGTGCATTACA
TCGTGTTTGTCTGCCAGCCGCACTCCTTCTCTGGGCTCTGGTGGGAGATCCGCATGCACTGTGAACTCTT
CTTCAACTCCTTCCAGGGTTTCTTCGTGTCTATTGTCTATTGCTACTGCAATGGAGAGGTGCAGGCTGAG
GTGAAGAAGATGTGGACTCGATGGAATCTGTCCATCGACTGGAAAAGGGCGCCGCCTTGTGGCGGCCAAA
GGTACGGCTCGGTGCTCACCACTGTCACTCACAGCACCAGCAGCCAGTCACAGATGGGGGCAAGCACGCG
CCTGGTGCTCATCTCTGGCAAACCCACCAAGAATGCCTGCAGACAGATCGACAGCCATGTGACTCTACCT
GGCTATGTCTGGAGTAGTTCTGAGCAGGACTGCCAAACACACTCGCCCCCCGAGGAGACTAAGGAAGGTC
ACAGGCGACAGGGAGATGATAGTCCAGTGATGGAGTCTTCCAGGCCAGTGGCGTTCACCCTAGACACTGA
AGGATGCAAGGGAGAAACCCATCCTATCTGA

Translation (546 aa):
MAWLETFTYICGWLILSSCLLVRAQLDSDGTITIEEQIVLVMKAKMQCELNITAQLQEGEGNCFPEWDGI
ICWPRGTVGKMSAVPCPPYVYDFNHKGVAFRHCTPNGTWDSIHGSNKTWANYSDCFLQPDINIGKQEFFE
SLYILYTVGYSISFGSLAVAILIIGYFRRLHCTRNYIHLHLFVSFMLRAMSIFVKDRVAQAHLGVEALQS
LVMQGDLQNFIGGPSVDKSQYVGCKIAVVMFIYFLATNYYWILVEGLYLHNLIFVSFFSDTKYLWGFISI
GWGFPAVFVVAWAVARATLADTRCWELSAGDRWIYQAPILAAIGLNFILFLNTVRVLATKIWETNAVGHD
MRKQYRKLAKSTLVLVLVFGVHYIVFVCQPHSFSGLWWEIRMHCELFFNSFQGFFVSIVYCYCNGEVQAE
VKKMWTRWNLSIDWKRAPPCGGQRYGSVLTTVTHSTSSQSQMGASTRLVLISGKPTKNACRQIDSHVTLP
GYVWSSSEQDCQTHSPPEETKEGHRRQGDDSPVMESSRPVAFTLDTEGCKGETHPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH