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Report for CCDS15109.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15109.1 Public Mus musculus 1 Sp140l2 23 108 98 CCDS HistoryNCBI Gene:620078Re-query CCDS DB by CCDS ID:15109.1Re-query CCDS DB by GeneID:620078See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15109.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064341.8 ENSMUSP00000066587.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064341.8Link to Ensembl Protein Viewer:ENSMUSP00000066587.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000064341Re-query CCDS DB by Protein ID:ENSMUSP00000066587
Original member Current member NCBI NM_001037909.3 NP_001032998.2 Accepted alive Link to Nucleotide Sequence:NM_001037909.3Link to Protein Sequence:NP_001032998.2Re-query CCDS DB by Nucleotide ID:NM_001037909Re-query CCDS DB by Protein ID:NP_001032998Link to BLAST:NP_001032998.2

Chromosomal Locations for CCDS 15109.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 85246937 85247136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85248299 85248379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85254103 85254183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85254514 85254576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85259695 85259866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85260737 85260899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 85270033 85270064 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (792 nt):
ATGGCAGGAGGCAACAATGAACTCAGCAGCAGGACAATCCCAGAGGACCAGAATGAAGAGGAGTCAGATG
ACTATCAGCTCATGTTCAAGCACTTCAAAGAAAACAAGGTGGAGATCGCAAGTGCCATCACCAAGCCGTT
TCCTTTCCTCATGAGCCTTCGAGACCGAGACTTCATCTCGGAGCAGAAGTTTCAGGAATATCAAGAAACA
TGTAAGAACCTGGTCCCAGTGGAGAGAGTCGTGTACGACGTCCTCAGCAATGTACAGAAGAAGTTTAGCC
GGGATCTTCTGAAAGTGATATTCAGCAAAACACATCTGAAGGCCTACCCCGACTTAAAGGAGACTCTAAA
ACACTTCTTCCTAAATGCATCCAAAACGAATGATGAACAAGCAGAGGAGATGCTTAGCCTCCCACAATGC
AATGGAGGAGAGGGAAGTAGTTCTTGTGAACAAACGTGTGATGAACAAGAGCCCCAGGATGACCTGCCCT
CATCCCTGAGACAAGAAGCAGCAAGAAGAAAAAAACGTCCGAACTGGTCAAATTCCAAAAGAAGACTGCA
GAAAAAAAAGCCCCGTCAAGATGAGATGATGGGAGTGCCCTCACCTGGACATGGAGTTCAAGAGAAGCTC
AAGGCGGTGAGCAGGAGGACTTTGTGGAAAGATGACTCATCTACGAACGTGAAGGAGGTGACCAAGACAC
TGAGAGCAAGGATGAGGTGTGGCACCTGCCATTGGAAAGGCTCAGCCTGGGCAAATCTCTCAGAGCTGGT
GCAGGGGTCGAGGGATACATGA

Translation (263 aa):
MAGGNNELSSRTIPEDQNEEESDDYQLMFKHFKENKVEIASAITKPFPFLMSLRDRDFISEQKFQEYQET
CKNLVPVERVVYDVLSNVQKKFSRDLLKVIFSKTHLKAYPDLKETLKHFFLNASKTNDEQAEEMLSLPQC
NGGEGSSSCEQTCDEQEPQDDLPSSLRQEAARRKKRPNWSNSKRRLQKKKPRQDEMMGVPSPGHGVQEKL
KAVSRRTLWKDDSSTNVKEVTKTLRARMRCGTCHWKGSAWANLSELVQGSRDT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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