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Report for CCDS1519.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1519.1 Public Homo sapiens 1 SPATA17 24 110 108 CCDS HistoryNCBI Gene:128153Re-query CCDS DB by CCDS ID:1519.1Re-query CCDS DB by GeneID:128153See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1519.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366933.5 ENSP00000355900.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366933.5Link to Ensembl Protein Viewer:ENSP00000355900.4Re-query CCDS DB by Nucleotide ID:ENST00000366933Re-query CCDS DB by Protein ID:ENSP00000355900
Original member Current member NCBI NM_001375655.1 NP_001362584.1 Accepted alive Link to Nucleotide Sequence:NM_001375655.1Link to Protein Sequence:NP_001362584.1Re-query CCDS DB by Nucleotide ID:NM_001375655Re-query CCDS DB by Protein ID:NP_001362584Link to BLAST:NP_001362584.1
Original member Current member NCBI NM_138796.4 NP_620151.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_138796.4Link to Protein Sequence:NP_620151.1Re-query CCDS DB by Nucleotide ID:NM_138796Re-query CCDS DB by Protein ID:NP_620151Link to BLAST:NP_620151.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001362584.1 361 Q96L03 361 100% 0 0
NP_620151.1 361 Q96L03 361 100% 0 0

Chromosomal Locations for CCDS 1519.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 217631379 217631446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 217648882 217648971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 217651097 217651178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 217669033 217669083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 217683258 217683361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 217741975 217742098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 217774334 217774537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 217782174 217782322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 217801718 217801850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 217862774 217862854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1086 nt):
ATGGCCACGTTAGCCCGGCTGCAAGCTAGGTCGTCGACTGTAGGAAATCAGTACTACTTTAGGAACAGTG
TTGTAGATCCATTTAGAAAAAAGGAGAATGATGCAGCAGTTAAAATCCAAAGCTGGTTTCGAGGATGTCA
AGTTCGGGCATATATCAGGCATTTAAACAGGATTGTAACAATTATTCAAAAATGGTGGAGAAGTTTCTTA
GGCAGAAAGCAATATCAACTAACTGTGCAGGTAGCATATTATACTATGATGATGAATCTCTACAATGCAA
TGGCTGTCAGGATTCAGAGACGATGGCGAGGCTATAGGGTTCGGAAGTACCTCTTTAATTATTATTATTT
GAAAGAGTACCTGAAAGTCGTTTCAGAGACCAATGATGCAATTAGGAAGGCACTGGAGGAGTTTGCAGAA
ATGAAAGAAAGAGAAGAGAAGAAGGCTAACCTCGAAAGGGAAGAGAAGAAAAGAGATTACCAAGCCCGAA
AGATGCATTACCTCCTCAGCACAAAGCAGATTCCAGGAATATACAATTCACCCTTCAGAAAAGAGCCTGA
TCCATGGGAGCTGCAATTACAGAAGGCAAAGCCTTTAACACACCGAAGACCTAAAGTTAAGCAGAAGGAC
TCCACCAGCCTTACTGATTGGCTAGCTTGTACAAGCGCCCGTTCTTTTCCTCGGTCTGAAATTCTACCAC
CTATTAATAGAAAGCAATGTCAGGGGCCCTTCCGAGATATCACCGAAGTATTAGAACAACGCTACAGGCC
TTTGGAGCCAACGTTGCGGGTGGCAGAACCAATCGATGAGTTAAAGTTGGCCAGAGAGGAGCTCAGAAGA
GAGGAATGGCTGCAAAATGTAAATGACAATATGTTTTTGCCATTTTCTTCATACCATAAAAATGAAAAGT
ACATCCCATCAATGCATTTATCAAGCAAGTATGGTCCTATTTCTTACAAAGAACAATTCCGAAGTGAAAA
TCCTAAGAAATGGATCTGTGACAAGGATTTCCAGACTGTATTACCATCATTTGAGCTCTTCTCAAAGTAT
GGAAAATTATATTCAAAAGCTGGACAGATTGTATAA

Translation (361 aa):
MATLARLQARSSTVGNQYYFRNSVVDPFRKKENDAAVKIQSWFRGCQVRAYIRHLNRIVTIIQKWWRSFL
GRKQYQLTVQVAYYTMMMNLYNAMAVRIQRRWRGYRVRKYLFNYYYLKEYLKVVSETNDAIRKALEEFAE
MKEREEKKANLEREEKKRDYQARKMHYLLSTKQIPGIYNSPFRKEPDPWELQLQKAKPLTHRRPKVKQKD
STSLTDWLACTSARSFPRSEILPPINRKQCQGPFRDITEVLEQRYRPLEPTLRVAEPIDELKLAREELRR
EEWLQNVNDNMFLPFSSYHKNEKYIPSMHLSSKYGPISYKEQFRSENPKKWICDKDFQTVLPSFELFSKY
GKLYSKAGQIV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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