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Report for CCDS15211.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15211.1 Public Mus musculus 1 Vps4b 23 108 98 CCDS HistoryNCBI Gene:20479Re-query CCDS DB by CCDS ID:15211.1Re-query CCDS DB by GeneID:20479See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15211.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000094646.5 ENSMUSP00000092230.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000094646.5Link to Ensembl Protein Viewer:ENSMUSP00000092230.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000094646Re-query CCDS DB by Protein ID:ENSMUSP00000092230
Original member Current member EBI ENSMUST00000112736.7 ENSMUSP00000108356.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112736.7Link to Ensembl Protein Viewer:ENSMUSP00000108356.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112736Re-query CCDS DB by Protein ID:ENSMUSP00000108356
Original member Current member NCBI NM_009190.2 NP_033216.2 Accepted alive Link to Nucleotide Sequence:NM_009190.2Link to Protein Sequence:NP_033216.2Re-query CCDS DB by Nucleotide ID:NM_009190Re-query CCDS DB by Protein ID:NP_033216Link to BLAST:NP_033216.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033216.2 444 P46467 444 100% 0 0

Chromosomal Locations for CCDS 15211.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 106772447 106772548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106774007 106774147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106777270 106777489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106778969 106779050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106779962 106780110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106780504 106780660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106782666 106782785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106786703 106786770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106789929 106790085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106791678 106791789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 106796421 106796447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGGCGTCCACGAACACCAACCTGCAGAAAGCAATAGATCTTGCAAGCAAAGCAGCCCAGGAAGACAAAG
CTGGGAACTATGAGGAAGCTCTTCAACTCTACCAACATGCTGTGCAGTATTTTCTCCATGTTGTTAAATA
TGAAGCACAAGGTGATAAAGCCAAGCAAAGTATCAGGGCCAAGTGTACAGAATATCTCGATAGAGCAGAA
AAACTAAAGGAATATCTGAAGAAAAAGGAGAAGAAACCACAGAAGCCTGTGAAAGAGGAACAGTCAGGCC
CAGTTGATGAGAAGGGGAATGACAGTGATGGGGAAGCAGAATCTGATGATCCTGAAAAAAAGAAACTGCA
GAATCAACTTCAAGGTGCCATTGTTATAGAGCGACCAAATGTGAAGTGGAGTGATGTTGCTGGTCTCGAA
GGAGCCAAAGAAGCTCTTAAAGAGGCTGTGATTCTGCCTATTAAGTTTCCTCATCTGTTTACAGGAAAGC
GGACACCTTGGAGAGGAATCCTATTATTTGGACCACCAGGAACAGGAAAATCTTATTTGGCTAAAGCTGT
TGCAACGGAAGCAAACAACTCAACATTTTTCTCAATATCTTCCTCTGACCTTGTGTCTAAGTGGCTGGGG
GAAAGCGAAAAACTGGTTAAGAACTTATTCCAGCTTGCCAGAGAGAACAAGCCTTCTATCATCTTCATCG
ATGAGATTGATTCTCTGTGTGGTTCCAGAAGTGAGAATGAGAGCGAGGCTGCACGGAGAATTAAGACGGA
GTTCCTGGTTCAAATGCAAGGAGTTGGTGTGGACAATGATGGCATTTTGGTTCTGGGAGCTACAAATATA
CCCTGGGTTCTGGATTCTGCAATTAGGCGAAGATTTGAGAAACGTATTTATATTCCTTTGCCCGAAGCCC
ATGCCCGAGCAGCCATGTTTAGACTGCACTTGGGCAGCACTCAGAACAGCCTCACAGAAGCAGACTTCCA
AGAACTTGGGAGGAAGACGGATGGCTATTCAGGAGCAGATATAAGTATCATTGTACGGGATGCACTTATG
CAGCCTGTGAGAAAAGTTCAGTCAGCTACTCACTTCAAAAAGGTTCGAGGACCCTCAAGAGCTGATCCTA
ACTGCATTGTAAATGACCTGCTGACACCCTGCTCTCCGGGAGACCCTGGGGCTATTGAAATGACATGGAT
GGATGTTCCTGGAGATAAACTCTTGGAGCCAGTTGTTTCCATGTGGGATATGCTGCGGTCCCTGTCCAGC
ACAAAGCCAACAGTCAATGAGCAGGACTTGTTGAAGCTGAAGAAGTTTACAGAAGATTTTGGCCAGGAAG
GCTAA

Translation (444 aa):
MASTNTNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAE
KLKEYLKKKEKKPQKPVKEEQSGPVDEKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLE
GAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLG
ESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI
PWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALM
QPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSS
TKPTVNEQDLLKLKKFTEDFGQEG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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