NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15214.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15214.1 Public Mus musculus 1 Serpinb3a 23 108 98 CCDS HistoryNCBI Gene:20248Re-query CCDS DB by CCDS ID:15214.1Re-query CCDS DB by GeneID:20248See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15214.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000027567.13 ENSMUSP00000027567.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000027567.13Link to Ensembl Protein Viewer:ENSMUSP00000027567.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000027567Re-query CCDS DB by Protein ID:ENSMUSP00000027567
Original member Current member EBI ENSMUST00000112717.2 ENSMUSP00000108337.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112717.2Link to Ensembl Protein Viewer:ENSMUSP00000108337.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112717Re-query CCDS DB by Protein ID:ENSMUSP00000108337
Original member Current member NCBI NM_009126.3 NP_033152.3 Accepted alive Link to Nucleotide Sequence:NM_009126.3Link to Protein Sequence:NP_033152.3Re-query CCDS DB by Nucleotide ID:NM_009126Re-query CCDS DB by Protein ID:NP_033152Link to BLAST:NP_033152.3

Chromosomal Locations for CCDS 15214.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 107046016 107046420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107047043 107047198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107047473 107047615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107048490 107048607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107049327 107049449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107051009 107051065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 107051609 107051770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1164 nt):
ATGCATTTGTTTGCTGAAGCCACTACTAAATTCACACTTGAGCTGTACAGGCAGCTCAGAGAATCAGATA
ACAACATTTTCTATTCCCCGATCAGCATGATGACAGCATTAGCAATGCTCCAGCTTGGAGCCAAAGGAAA
CACTGAAAAACAAATTGAGAAGGTTCTTCAATTCAATGAAACCACCAAGAAGACAACAGAAAAATCTGCA
CACTGCCATGATGAAGAAAATGTTCATGAACAATTTCAAAAGCTTATGACTCAGTTAAACAAATCCAATG
ATGCTTATGATCTAAAGGCTGCCAACAGTATCTATGGAGCAAAGGGTTTCCCATTTGTCCAGACATTTTT
GGAAGACATTAAGGAATATTATCAAGCTAACGTGGAATCACTGGATTTCGAACATGCAGCAGAAGAGAGT
GAAAAGAAGATTAATTCCTGGGTAGAAAGCCAAACAAATGGAAAAATCAAGGACTTATTTCCTAATGGGA
GCCTGAACAGGAGCACTATAATGGTTCTGGTGAATGCAGTGTATTTCAAAGGACAATGGAACCACAAATT
TGATGAAAAGCATACCACAGAAGAAAAGTTTTGGCTGAACAAGAACACAAGTAAACCTGTCCAGATGATG
AAACAAAACATCGAATTTAACTTCATGTTTCTGGAGGATGTGCAGGCCAAGATTGTGGAAATACCATACA
AAGGCAAAGAGCTAAGTATGATTGTCCTGTTGCCAGTGGAAATCAATGGTCTGAAGCAGCTTGAAGAACA
ACTCACTGCTGACAAGTTACTGGAGTGGACAAGAGCAGAAAACATGCATATGACCGAGTTGTATTTATCT
TTGCCTCGGTTCAAAGTGGATGAGAAGTATGACCTCCCAATTCCATTGGAACACATGGGAATGGTCGATG
CCTTTGATCCACAGAAGGCTGACTTCTCTGGTATGAGCAGCACTCAAGGTCTTGTGGTGTCTAAAGTTTT
ACACAAGTCCTTTGTGGAGGTGAATGAAGAGGGAACAGAAGCTGCTGCTGCAACAGGTGTGGAAGTCAGT
TTAACATCAGCACAGATAGCAGAAGATTTCTGTTGTGATCATCCATTCCTATTCTTCATCATTCACAGAA
AAACCAACAGCATCCTCTTCTTTGGCAGAATCTCCTCCCCTTAG

Translation (387 aa):
MHLFAEATTKFTLELYRQLRESDNNIFYSPISMMTALAMLQLGAKGNTEKQIEKVLQFNETTKKTTEKSA
HCHDEENVHEQFQKLMTQLNKSNDAYDLKAANSIYGAKGFPFVQTFLEDIKEYYQANVESLDFEHAAEES
EKKINSWVESQTNGKIKDLFPNGSLNRSTIMVLVNAVYFKGQWNHKFDEKHTTEEKFWLNKNTSKPVQMM
KQNIEFNFMFLEDVQAKIVEIPYKGKELSMIVLLPVEINGLKQLEEQLTADKLLEWTRAENMHMTELYLS
LPRFKVDEKYDLPIPLEHMGMVDAFDPQKADFSGMSSTQGLVVSKVLHKSFVEVNEEGTEAAAATGVEVS
LTSAQIAEDFCCDHPFLFFIIHRKTNSILFFGRISSP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH