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Report for CCDS15389.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15389.1 Public Mus musculus 1 Tor1aip2 23 108 98 CCDS HistoryNCBI Gene:240832Re-query CCDS DB by CCDS ID:15389.1Re-query CCDS DB by GeneID:240832See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15389.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060404.4 ENSMUSP00000050817.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060404.4Link to Ensembl Protein Viewer:ENSMUSP00000050817.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000060404Re-query CCDS DB by Protein ID:ENSMUSP00000050817
Original member Current member EBI ENSMUST00000111757.9 ENSMUSP00000107387.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111757.9Link to Ensembl Protein Viewer:ENSMUSP00000107387.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000111757Re-query CCDS DB by Protein ID:ENSMUSP00000107387
Original member Current member NCBI NM_001358626.1 NP_001345555.1 Accepted alive Link to Nucleotide Sequence:NM_001358626.1Link to Protein Sequence:NP_001345555.1Re-query CCDS DB by Nucleotide ID:NM_001358626Re-query CCDS DB by Protein ID:NP_001345555Link to BLAST:NP_001345555.1
Original member Current member NCBI NM_001358627.1 NP_001345556.1 Accepted alive Link to Nucleotide Sequence:NM_001358627.1Link to Protein Sequence:NP_001345556.1Re-query CCDS DB by Nucleotide ID:NM_001358627Re-query CCDS DB by Protein ID:NP_001345556Link to BLAST:NP_001345556.1
Original member Current member NCBI NM_172843.4 NP_766431.3 Accepted alive Link to Nucleotide Sequence:NM_172843.4Link to Protein Sequence:NP_766431.3Re-query CCDS DB by Nucleotide ID:NM_172843Re-query CCDS DB by Protein ID:NP_766431Link to BLAST:NP_766431.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001345555.1 502 Q8BYU6-1 502 100% 0 0
NP_001345556.1 502 Q8BYU6-1 502 100% 0 0
NP_766431.3 502 Q8BYU6-1 502 100% 0 0

Chromosomal Locations for CCDS 15389.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 156059521 156059587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156061588 156062169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156063593 156063694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 156064701 156065458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1509 nt):
ATGTCCCAAAGTCTGAAGAGCCAGAACACAAACATGAGCGACAGTGGCTGCAGGGATCCTGTGGGAGACT
CACAAAATGTTTTGGAAAATGATCCATCAATAAACTCTCAAACACAGGACACCAGAGTCACACCGAATAA
CACTGCAGAAGCCCAGCCCCTACAGCCCACATCTGATCTTAAAGAAGACCACCATGAAATAGGGGCCAGA
GCTCAGGAGCATACAGACACAGGTGACAGGTCAGAAAGTCCAGAGGAACCAGCGTTAGAGAAACCTCCAC
TGGATAAAGCAGAGCTGGAGAGCAGCCCGAGTTCTCAGGACACAGAGCTCGGGCATCACCCCCACTCAGA
ACATGGGGGCGGAGACGCCCTAGATCTGGATCCTAACTGCTCTCAAAGCGACTTGGGAGGAAGAGCAGAT
GCACACCTGGAGAGCAGCTCTGTAGCGTCCCCAGAGGGAGCAGGTGACAGGGGTGAAGCTGATGAGCACC
TGGAGAGCAGCTCTGCAGCCCCCACAGAGGGGGCAGGTGACAGGGGTGAAGCTGGTCAGGAACTGCTTGC
TGAAGACTCTACCGATGGCCAGAGTCTGGGCCATTCCAACACAGGTCCAGGGAACCAGGATTCACTGAGG
AGACGACTGCCTGTGCCCGAGGCTGGAAGTCATGAAGAGGAGACAGAGTTGGTGAAGGAAAAGCAAGAGG
TTGCACAGGATACATTGAGAAAGACTGATAAAAAGAGTCTCTGGACCTATGGTTCCGTGTTTCTCGGCTG
CCTGATCGTGGCTGTTGTGCTAAGCTCCGTCAACAGCTACTATTCTTCCCCAGCCCAGCAGGTGCCCCAG
AACCCGGCTTTGGAGGCCTTCCTGGCTCAGTTTGGCCAACTGAAGGAGAAATTTCCAGGTCAGAGTTCCT
TCCTGTGGCAGCGAGGACGTAAGTTTCTCCAGAAGCACCTCAATGCCTCGAACCCCAGTGAGCCGGCCAC
CATCATCTTCACAGCTGCTCGAGAGGGCAAGGAGACCCTCAAGTGCCTGAGCTACCATGTTGCCAACGCC
TACACCTCTTCCCAGAAGGTGACTGCCGTCTCCATAGACGGAGCCGAAAGGGCCCTGCAGGACAGTGACA
CAGTCAAGCTGCTGGTTGACTTGGAGCTTAGCGATGGGTTTGAGAATGGCCACAAGGCTGCTGTGGTCCA
CCACTTCGAATCCCTTCCTGCCGGCTCCACCCTGATCTTCTACAAGTACTGTGACCATGAGAACGCCGCC
TTTAAAGATGTGGCACTTGTCCTGACAGTCCTGCTGGAGGAGGAAACGTTAGAAGCAAGTGTAAGCCCCA
GGGAAATAGAAGAAAAGGTGAGGGATTTACTCTGGGCTAAGTTCACCAACTCTGAGAGCCCCACCTCCTA
CAGCCACATGGACTCAGACAAACTGAGTGGGCTCTGGAGCCGCATCTCCCACCTGGTGCTGCCCGTCCAG
CCCGTCAGGAACATAGAAGAGCGAGGCTGCCTTTTGTGA

Translation (502 aa):
MSQSLKSQNTNMSDSGCRDPVGDSQNVLENDPSINSQTQDTRVTPNNTAEAQPLQPTSDLKEDHHEIGAR
AQEHTDTGDRSESPEEPALEKPPLDKAELESSPSSQDTELGHHPHSEHGGGDALDLDPNCSQSDLGGRAD
AHLESSSVASPEGAGDRGEADEHLESSSAAPTEGAGDRGEAGQELLAEDSTDGQSLGHSNTGPGNQDSLR
RRLPVPEAGSHEEETELVKEKQEVAQDTLRKTDKKSLWTYGSVFLGCLIVAVVLSSVNSYYSSPAQQVPQ
NPALEAFLAQFGQLKEKFPGQSSFLWQRGRKFLQKHLNASNPSEPATIIFTAAREGKETLKCLSYHVANA
YTSSQKVTAVSIDGAERALQDSDTVKLLVDLELSDGFENGHKAAVVHHFESLPAGSTLIFYKYCDHENAA
FKDVALVLTVLLEEETLEASVSPREIEEKVRDLLWAKFTNSESPTSYSHMDSDKLSGLWSRISHLVLPVQ
PVRNIEERGCLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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