NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15410.1 Public Mus musculus 1 Rc3h1 23 108 98 CCDS HistoryNCBI Gene:381305Re-query CCDS DB by CCDS ID:15410.1Re-query CCDS DB by GeneID:381305See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15410.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000161609.7 ENSMUSP00000124871.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000161609.7Link to Ensembl Protein Viewer:ENSMUSP00000124871.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000161609Re-query CCDS DB by Protein ID:ENSMUSP00000124871
Original member Current member NCBI NM_001024952.2 NP_001020123.1 Accepted alive Link to Nucleotide Sequence:NM_001024952.2Link to Protein Sequence:NP_001020123.1Re-query CCDS DB by Nucleotide ID:NM_001024952Re-query CCDS DB by Protein ID:NP_001020123Link to BLAST:NP_001020123.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020123.1 1130 Q4VGL6 1130 100% 0 0

Chromosomal Locations for CCDS 15410.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 160930114 160930344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160938112 160938232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160939995 160940234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160940819 160940994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160942528 160942728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160946534 160946666 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160948307 160948425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160950222 160950334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160950841 160951122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160951615 160951829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160954784 160955151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160955815 160955979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160959401 160959553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160962271 160962484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160963479 160963569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160963708 160963840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160964950 160965120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160965673 160965788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 160967647 160967797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3393 nt):
ATGCCTGTACAAGCTCCACAATGGACGGATTTCCTTTCCTGCCCAATTTGCACTCAGACTTTCGACGAAA
CAATTCGAAAGCCCATCAGTTTGGGCTGTGGCCATACTGTCTGCAAAATGTGCCTGAATAAACTCCACCG
TAAGGCTTGCCCATTTGACCAGACCACTATCAATACGGACATTGAGCTTCTTCCTGTGAACTCAGCATTA
CTGCAGCTAGTGGGTGCTCAGATCCCTGAGCAACAGCCCATTACTTTGTGTAGTGGGGTTGAAGATACAA
AGCATTATGAGGAAGCCAAGAAATGTGTAGAAGAATTAGCATTGTACCTGAAGCCACTCAGCAGTGCGAG
AGGTGTGGGTCTAAATAGCACTACTCAGAGTGTTCTGAGTCGCCCAATGCAGAGGAAACTTGTGACTCTG
GTTCATTGCCAGCTAGTGGAAGAAGAAGGCAGGATCCGTGCTATGAGGGCTGCTCGATCTTTAGGTGAAC
GCACAGTTACAGAGCTCATTCTCCAGCACCAGAATCCTCAGCAACTCTCTTCTAATCTCTGGGCAGCAGT
CAGAGCTAGGGGCTGCCAGTTCCTTGGACCAGCGATGCAGGAGGAAGCTCTGAAGCTGGTCTTGCTGGCC
TTAGAAGATGGTTCTGCATTGTCTCGGAAAGTGTTGGTTCTCTTCGTGGTGCAAAGACTGGAGCCACGTT
TTCCTCAAGCCTCTAAAACCAGCATTGGGCATGTTGTTCAGCTCCTCTACAGAGCCTCCTGCTTCAAGGT
CACCAAACGTGATGAAGACTCTTCTTTGATGCAACTGAAAGAAGAATTTAGGACTTACGAAGCTCTGAGG
AGAGAACATGACTCCCAGATAGTGCAAATTGCTATGGAAGCTGGCTTAAGGATTGCACCAGACCAGTGGT
CCTCTTTGCTTTATGGGGATCAGTCTCACAAATCTCATATGCAGTCTATTATTGACAAGTTACAGACCCC
TGCCTCATTTGCACAGAGTGTTCAGGAGCTAACAATTGCTCTCCAGCGGACTGGAGACCCAGCGAATTTG
AACCGACTAAGACCCCATTTGGAGTTACTCGCAAACATTGACCCTAGTCCAGATGCTCCTCCTCCAACAT
GGGAACAGCTAGAAAATGGGCTGGTTGCTGTACGTACGGTAGTGCATGGATTGGTTGATTATATCCAGAA
CCACAGCAAAAAAGGAGCAGATCAACAACAGCCTCCACAGCATAGCAAATACAAAACATACATGTGTCGA
GATATGAAGCAAAGGGGAGGATGCCCTCGTGGTGCCAGCTGTACGTTTGCACATTCACAGGAAGAACTGG
AAAAGTTTCGTAAAATGAACAAACGTCTGGTTCCCAGAAGACCCTTGAGTGCCTCTTTGGGTCAACTTAA
TGAGGTGGGCCTGCCTTCAGCACCTATACTTTCTGATGAAAGTGCAGTGGACTTGTCCAACAGAAAACCT
CCTGCACTCCCAAATGGAATTGCATCGTCAGGGAGCACAGTGACACAACTGATTCCACGTGGGACAGACC
CCAGCTTTGATTCTTCTCTGAAACCAGTAAAGCTAGACCACCTGAGCAGTAGTGCTCCGGGGTCCCCTCC
TGACCTGCTGGAATCTGCCCCTAAGAGTATTTCTGCCTTACCTGTGAATCCACATCCTGTACCTCCAAGG
GGACCAACAGATCTGCCTCCCATGCCTGTCACCAAACCAATTCAGATGGTACCTCGAGGTTCTCAGCTAT
ATCCAGCACAACAAGCAGATGTTTATTATCAGGATCCTCGAGGAAGTGCCCCAGCTTTTGAGACAGCACC
TTACCAGCAGGGTATGTACTATACTCCACCACCATGTGTGTCCCGCTTTGTCCGACCTCCACCATCTGCT
CCTGAACCTGGTCCTCCATACTTGGATCATTATTCACCCTACCTCCAAGATCGTGTCATAAACTCTCAGT
ATGGCACACAGCCACAACAGTACCCACCTATGTACCCAGCTCACTACGATGGCCGCCGTGTATACCCTGC
TCAGTCTTACACAAGAGAGGAGATGTTCCGGGAAAGCCCTATACCCATTGACATTCCATCTGCAGCAGTG
CCGTCCTATGTACCTGAGTCCAGAGAACGGTACCAACAGGTAGAGGGTTACTACCCGGTGGCTCCTCATC
CAGCTCAGATCAGACCTTCATACCCCAGGGATCCTCCTTATAGTCGGCTTCCTCCTCCCCAACCCCATCC
TAGTCTGGATGAGCTACATCGAAGGCGGAAGGAAATAATGGCCCAGCTAGAGGAAAGAAAAGTCATCTCT
CCACCTCCTTTTGCACCGTCACCAACATTGCCTCCTGCATTCCATCCAGAGGAATTTTTGGATGAAGACT
TGAAGGTAGCCGGAAAATACAAAGCAAATGATTATAGCCAGTATTCTCCTTGGTCATGTGATACCATCGG
CTCCTACATTGGAACCAAAGATGCAAAACCCAAAGATGTTGTGGCAGCGGGGAGTGTGGAAATGATGAAT
GTAGAAAGTAAAGGAACGAGAGAGCAGAGGTTGGACCTTCAGAGAAGAGCAGTGGAGACGAGCGATGATG
ACCTCATCCCGTTTGGAGACCGACCAACAGTCTCTCGATTCGGTGCCATCTCTCGAACATCCAAAACACT
GTATCAGGGTGCTGGCCCACTGCAAGCTATAGCACCTCAGGGAGCACCCACAAAATCTATTAACATTTCC
GATTACAGTGCATATGGAGCTCATGGTGGCTGGGGAGATTCTCCATACTCACCTCATGCAAACATACCTC
CTCAGGGACACTTCATTGAGAGGGAGAAAATGTCCATGGCAGAAGTGGCCAGTCATGGAAAACCCCTTCT
ATCTGCTGAAAGAGAACAATTACGGCTAGAATTGCAGCAGCTGAACCATCAGATCAGCCAGCAGACCCAG
CTACGAGGACTAGAGGCTGTTAGTAACCGGCTGGTGTTACAGAGGGAGGTGAACACCCTGGCAAGCCAGC
CACAGCCCCCTCAGCTGCCTCCAAAATGGCCTGGAATGATCTCAAGTGAGCAGCTCAGCTTGGAACTGCA
TCAGGTGGAAAGAGAAATTGGGAAGAGGACCCGGGAATTGAGTATGGAGAACCAGTGTTCTGTAGACATG
AAAAGCAAACTGGGTACAAGCAAGCAAGCAGAAAATGGCCAGCCCGAGCCCCAAAACAAGATCCGCACTG
AGGACCTTACATTGACATTCAGTGATGTACCAAATGGATCAGCCTTGACACAAGAGAATCTCAGCCTCCT
ATCAAACAAGACCAGCTCTTTGAATCTGTCAGAAGACTCTGAGGGAGGAGGAGATAACAATGATTCCCAG
AGATCAGGAGTTGTTTCCAATTCTGCTCCCTAG

Translation (1130 aa):
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTDIELLPVNSAL
LQLVGAQIPEQQPITLCSGVEDTKHYEEAKKCVEELALYLKPLSSARGVGLNSTTQSVLSRPMQRKLVTL
VHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLSSNLWAAVRARGCQFLGPAMQEEALKLVLLA
LEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALR
REHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANL
NRLRPHLELLANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGADQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSAPILSDESAVDLSNRKP
PALPNGIASSGSTVTQLIPRGTDPSFDSSLKPVKLDHLSSSAPGSPPDLLESAPKSISALPVNPHPVPPR
GPTDLPPMPVTKPIQMVPRGSQLYPAQQADVYYQDPRGSAPAFETAPYQQGMYYTPPPCVSRFVRPPPSA
PEPGPPYLDHYSPYLQDRVINSQYGTQPQQYPPMYPAHYDGRRVYPAQSYTREEMFRESPIPIDIPSAAV
PSYVPESRERYQQVEGYYPVAPHPAQIRPSYPRDPPYSRLPPPQPHPSLDELHRRRKEIMAQLEERKVIS
PPPFAPSPTLPPAFHPEEFLDEDLKVAGKYKANDYSQYSPWSCDTIGSYIGTKDAKPKDVVAAGSVEMMN
VESKGTREQRLDLQRRAVETSDDDLIPFGDRPTVSRFGAISRTSKTLYQGAGPLQAIAPQGAPTKSINIS
DYSAYGAHGGWGDSPYSPHANIPPQGHFIEREKMSMAEVASHGKPLLSAEREQLRLELQQLNHQISQQTQ
LRGLEAVSNRLVLQREVNTLASQPQPPQLPPKWPGMISSEQLSLELHQVEREIGKRTRELSMENQCSVDM
KSKLGTSKQAENGQPEPQNKIRTEDLTLTFSDVPNGSALTQENLSLLSNKTSSLNLSEDSEGGGDNNDSQ
RSGVVSNSAP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH