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Report for CCDS15417.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15417.1 Public Mus musculus 1 Tnfsf18 23 108 98 CCDS HistoryNCBI Gene:240873Re-query CCDS DB by CCDS ID:15417.1Re-query CCDS DB by GeneID:240873See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15417.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000086084.1 ENSMUSP00000083251.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000086084.1Link to Ensembl Protein Viewer:ENSMUSP00000083251.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000086084Re-query CCDS DB by Protein ID:ENSMUSP00000083251
Original member NCBI NM_183391.3 NP_899247.3 Updated not alive Link to Nucleotide Sequence:NM_183391.3Link to Protein Sequence:NP_899247.3Re-query CCDS DB by Nucleotide ID:NM_183391Re-query CCDS DB by Protein ID:NP_899247
Current member NCBI NM_183391.4 NP_899247.3 Accepted alive Link to Nucleotide Sequence:NM_183391.4Link to Protein Sequence:NP_899247.3Re-query CCDS DB by Nucleotide ID:NM_183391Re-query CCDS DB by Protein ID:NP_899247Link to BLAST:NP_899247.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899247.3 173 Q7TS55 173 100% 0 0

Chromosomal Locations for CCDS 15417.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 161494713 161494847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161500471 161500504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 161503452 161503804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (522 nt):
ATGGAGGAAATGCCTTTGAGAGAATCAAGTCCTCAAAGGGCAGAGAGGTGCAAGAAGTCATGGCTCTTGT
GCATAGTGGCTCTGTTACTGATGTTGCTCTGTTCTTTGGGTACACTGATCTATACTTCACTCAAGCCAAC
TGCCATCGAGTCCTGCATGGTTAAGTTTGAACTATCATCCTCAAAATGGCACATGACATCTCCCAAACCT
CACTGTGTGAATACGACATCTGATGGGAAGCTGAAGATACTGCAGAGTGGCACATATTTAATCTACGGCC
AAGTGATTCCTGTGGATAAGAAATACATAAAAGACAATGCCCCCTTCGTAGTACAGATATATAAAAAGAA
TGATGTCCTACAAACTCTAATGAATGATTTTCAAATCTTGCCTATAGGAGGGGTTTATGAACTGCATGCT
GGAGATAACATATATCTGAAGTTCAACTCTAAAGACCATATTCAGAAAACTAACACATACTGGGGGATCA
TCTTAATGCCTGATCTACCATTCATCTCTTAG

Translation (173 aa):
MEEMPLRESSPQRAERCKKSWLLCIVALLLMLLCSLGTLIYTSLKPTAIESCMVKFELSSSKWHMTSPKP
HCVNTTSDGKLKILQSGTYLIYGQVIPVDKKYIKDNAPFVVQIYKKNDVLQTLMNDFQILPIGGVYELHA
GDNIYLKFNSKDHIQKTNTYWGIILMPDLPFIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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