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Report for CCDS15539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15539.1 Public Mus musculus 1 Or6k2 23 108 98 CCDS HistoryNCBI Gene:258302Re-query CCDS DB by CCDS ID:15539.1Re-query CCDS DB by GeneID:258302See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15539.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068403.3 ENSMUSP00000069662.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068403.3Link to Ensembl Protein Viewer:ENSMUSP00000069662.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000068403Re-query CCDS DB by Protein ID:ENSMUSP00000069662
Original member Current member EBI ENSMUST00000213748.1 ENSMUSP00000149052.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213748.1Link to Ensembl Protein Viewer:ENSMUSP00000149052.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213748Re-query CCDS DB by Protein ID:ENSMUSP00000149052
Original member Current member NCBI NM_146305.2 NP_666417.2 Accepted alive Link to Nucleotide Sequence:NM_146305.2Link to Protein Sequence:NP_666417.2Re-query CCDS DB by Nucleotide ID:NM_146305Re-query CCDS DB by Protein ID:NP_666417Link to BLAST:NP_666417.2

Chromosomal Locations for CCDS 15539.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 174158775 174159740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (966 nt):
ATGGGGTTCTCCAATTGGACCACTGCTCAGGAGTTCATTTTTTCTGCTTTCCCTTGCTCCTGGGGAGATT
CTGTCATCTGCTTCATCCCACTGCTCTTCATCTATGCTTTCATTATCGTTGGGAACCTGGTTATCATCAC
AGTGGTCCAGCTCAACGCACACCTCCACACACCCATGTACTTCTTCATCAGTGCCCTTTCCTTCCTGGAG
ATATGGTACACCACTGCCACCATCCCAAAGATGCTCTCTAGCCTGCTTAGTGAACGAAGGAGTATTACGT
TGAATGGTTGCGTCCTGCAGATGTATTTCTTCCATTCCACAGGCATCAGTGAGGTTTGTCTCTTGACAGC
TATGGCCTTTGATCGATACCTGGCTATCTGCAGCCCTCTTCATTATCCTACCATCATGACTTCCAGACTG
TGTGCCCAGCTGACCCTCGGTTGCTGTGTCTGTGGCTTTCTCACACCCCTCCCTGAGATTGCCTGGATCT
CCACACTTCCTTTTTGTGGCTCTAATCACCTTGAGCATATCTTCTGTGACTTCCTCCCGGTGCTGCGCCT
GGCCTGCACAGATACCCACACCATCGTCATGATTCAGGTGGTAGATATTGTCCATGCTGTGGAGATAATT
ACGGCAGTGATGCTCATTTTCATGTCCTATGTTGGTATTGTGGCTGTGATTCTGCGCATCCGTTCAGCTG
AAGGCCGCCGTAAAGCATTTTCCACGTGCGTCTCGCACCTTACTGTCTTTTTGCTCTTCTTTGGTAGTGT
GGCTCTCATGTATCTTCGCTTCTCTGCTACCTACTCCTTGTTCTGGGACACTGCCATTGCTCTGGCCTTT
GCAGTTCTATTCCCCTTCTTCAATCCCATCATCTACAGCCTTAGGAACAAAGAAATAAAAGAAGCCATAA
AAAAGCACATAGGTCAAGCTGGCATCTTAATTGGCAAGAGCAGAAACCTCCCTTAA

Translation (321 aa):
MGFSNWTTAQEFIFSAFPCSWGDSVICFIPLLFIYAFIIVGNLVIITVVQLNAHLHTPMYFFISALSFLE
IWYTTATIPKMLSSLLSERRSITLNGCVLQMYFFHSTGISEVCLLTAMAFDRYLAICSPLHYPTIMTSRL
CAQLTLGCCVCGFLTPLPEIAWISTLPFCGSNHLEHIFCDFLPVLRLACTDTHTIVMIQVVDIVHAVEII
TAVMLIFMSYVGIVAVILRIRSAEGRRKAFSTCVSHLTVFLLFFGSVALMYLRFSATYSLFWDTAIALAF
AVLFPFFNPIIYSLRNKEIKEAIKKHIGQAGILIGKSRNLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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