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Report for CCDS15553.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15553.1 Public Mus musculus 1 Zbtb18 23 108 98 CCDS HistoryNCBI Gene:30928Re-query CCDS DB by CCDS ID:15553.1Re-query CCDS DB by GeneID:30928See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15553.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077225.7 ENSMUSP00000076463.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077225.7Link to Ensembl Protein Viewer:ENSMUSP00000076463.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000077225Re-query CCDS DB by Protein ID:ENSMUSP00000076463
Original member Current member EBI ENSMUST00000195612.1 ENSMUSP00000141724.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000195612.1Link to Ensembl Protein Viewer:ENSMUSP00000141724.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000195612Re-query CCDS DB by Protein ID:ENSMUSP00000141724
Original member NCBI NM_001355099.1 NP_001342028.1 Updated not alive Link to Nucleotide Sequence:NM_001355099.1Link to Protein Sequence:NP_001342028.1Re-query CCDS DB by Nucleotide ID:NM_001355099Re-query CCDS DB by Protein ID:NP_001342028
Current member NCBI NM_001355099.2 NP_001342028.1 Accepted alive Link to Nucleotide Sequence:NM_001355099.2Link to Protein Sequence:NP_001342028.1Re-query CCDS DB by Nucleotide ID:NM_001355099Re-query CCDS DB by Protein ID:NP_001342028Link to BLAST:NP_001342028.1
Original member NCBI NM_001355100.1 NP_001342029.1 Updated not alive Link to Nucleotide Sequence:NM_001355100.1Link to Protein Sequence:NP_001342029.1Re-query CCDS DB by Nucleotide ID:NM_001355100Re-query CCDS DB by Protein ID:NP_001342029
Current member NCBI NM_001355100.2 NP_001342029.1 Accepted alive Link to Nucleotide Sequence:NM_001355100.2Link to Protein Sequence:NP_001342029.1Re-query CCDS DB by Nucleotide ID:NM_001355100Re-query CCDS DB by Protein ID:NP_001342029Link to BLAST:NP_001342029.1
Original member NCBI NM_001355101.1 NP_001342030.1 Updated not alive Link to Nucleotide Sequence:NM_001355101.1Link to Protein Sequence:NP_001342030.1Re-query CCDS DB by Nucleotide ID:NM_001355101Re-query CCDS DB by Protein ID:NP_001342030
Current member NCBI NM_001355101.2 NP_001342030.1 Accepted alive Link to Nucleotide Sequence:NM_001355101.2Link to Protein Sequence:NP_001342030.1Re-query CCDS DB by Nucleotide ID:NM_001355101Re-query CCDS DB by Protein ID:NP_001342030Link to BLAST:NP_001342030.1
Original member NCBI NM_001355102.1 NP_001342031.1 Updated not alive Link to Nucleotide Sequence:NM_001355102.1Link to Protein Sequence:NP_001342031.1Re-query CCDS DB by Nucleotide ID:NM_001355102Re-query CCDS DB by Protein ID:NP_001342031
Current member NCBI NM_001355102.2 NP_001342031.1 Accepted alive Link to Nucleotide Sequence:NM_001355102.2Link to Protein Sequence:NP_001342031.1Re-query CCDS DB by Nucleotide ID:NM_001355102Re-query CCDS DB by Protein ID:NP_001342031Link to BLAST:NP_001342031.1
Original member NCBI NM_013915.3 NP_038943.3 Updated not alive Link to Nucleotide Sequence:NM_013915.3Link to Protein Sequence:NP_038943.3Re-query CCDS DB by Nucleotide ID:NM_013915Re-query CCDS DB by Protein ID:NP_038943
Current member NCBI NM_013915.4 NP_038943.3 Accepted alive Link to Nucleotide Sequence:NM_013915.4Link to Protein Sequence:NP_038943.3Re-query CCDS DB by Nucleotide ID:NM_013915Re-query CCDS DB by Protein ID:NP_038943Link to BLAST:NP_038943.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001342028.1 522 Q9WUK6 522 100% 0 0
NP_001342029.1 522 Q9WUK6 522 100% 0 0
NP_001342030.1 522 Q9WUK6 522 100% 0 0
NP_001342031.1 522 Q9WUK6 522 100% 0 0
NP_038943.3 522 Q9WUK6 522 100% 0 0

Chromosomal Locations for CCDS 15553.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 177447103 177448671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1569 nt):
ATGGAGTTTCCAGACCACAGCAGACATTTGCTGCAGTGTCTGAGCGAGCAGAGGCACCAGGGCTTTCTTT
GTGACTGCACTGTTCTGGTGGGAGATGCCCAGTTCCGGGCACACCGAGCTGTTCTGGCTTCATGCAGCAT
GTATTTCCACCTCTTTTACAAGGACCAGCTGGACAAAAGAGACATTGTTCATCTGAACAGCGACATTGTG
ACAGCCCCCGCTTTCGCTCTCCTGCTTGAATTCATGTACGAAGGGAAACTCCAGTTCAAAGACTTGCCCA
TTGAGGACGTGCTAGCAGCTGCCAGTTATCTCCACATGTATGACATTGTCAAAGTCTGCAAAAAGAAGCT
GAAAGAGAAAGCTACCACAGAGGCGGACAGCACCAAAAAAGAAGAAGATGCTTCAAGTTGTTCGGATAAA
GTCGAGAGCCTCTCAGACGGCAGCAGCCACATGGCAGGTGACCTGCCCAGTGATGAAGATGAAGGCGAAG
ATGACAAATTGAACATTCTACCCAGCAAAAGGGACTTGGCAGCTGAGCCTGGGAACATGTGGATGCGATT
GCCCTCAGACTCAGCAGGCATCCCCCAGGCTGGCGGAGAGGCCGAGCCACACGCCACAGCAGCTGGAAAA
ACAGTAGCCAGCCCCTGCAGCTCAACAGAGTCTTTGTCCCAGAGGTCTGTCACCTCCGTGAGGGATTCGG
CAGATGTTGACTGTGTGCTGGACCTGTCTGTCAAGTCCAGCCTTTCAGGAGTTGAAAATCTGAACAGCTC
TTATTTCTCTTCACAGGACGTGCTGAGAAGCAACCTGGTGCAGGTGAAGGTGGAGAAAGAGGCGTCCTGT
GATGAGAGTGATGTTGGCACTAATGACTATGACATGGAACATAGCACTGTGAAAGAGAGTGTGAGCACTA
ACAACAGGGTACAGTATGAGCCAGCCCACCTGGCTCCTCTGAGGGAGGACTCGGTCTTAAGGGAACTGGA
TCGGGAGGACAAAGCCAGCGATGATGAGATGATGACCCCAGAGAGCGAGCGGGTCCAGGTGGAAGGGGGC
ATGGAGAACAGTCTGCTTCCCTACGTCTCCAATATCCTGAGCCCCGCAGGCCAGATCTTCATGTGCCCCC
TGTGCAACAAAGTCTTCCCCAGCCCCCACATCCTGCAGATCCACCTGAGCACGCACTTCCGAGAGCAGGA
TGGCATCCGTAGCAAGCCTGCCGCCGATGTCAATGTGCCCACGTGCTCCCTGTGTGGGAAGACTTTCTCC
TGCATGTACACCCTCAAGCGCCACGAGAGGACTCACTCGGGGGAGAAGCCCTACACGTGCACCCAATGCG
GCAAGAGTTTCCAGTACTCGCACAACCTGAGCCGTCATGCCGTGGTGCACACCCGCGAGAAGCCCCATGC
CTGCAAGTGGTGCGAGCGCAGGTTCACGCAGTCCGGAGACCTGTACAGACACATCCGCAAGTTCCACTGT
GAGTTGGTGAACTCCTTGTCGGTCAAAAGTGAAGCGCTGAGCTTGCCCACTGTCAGAGACTGGACCTTAG
AAGATAGCTCTCAAGAACTTTGGAAATAA

Translation (522 aa):
MEFPDHSRHLLQCLSEQRHQGFLCDCTVLVGDAQFRAHRAVLASCSMYFHLFYKDQLDKRDIVHLNSDIV
TAPAFALLLEFMYEGKLQFKDLPIEDVLAAASYLHMYDIVKVCKKKLKEKATTEADSTKKEEDASSCSDK
VESLSDGSSHMAGDLPSDEDEGEDDKLNILPSKRDLAAEPGNMWMRLPSDSAGIPQAGGEAEPHATAAGK
TVASPCSSTESLSQRSVTSVRDSADVDCVLDLSVKSSLSGVENLNSSYFSSQDVLRSNLVQVKVEKEASC
DESDVGTNDYDMEHSTVKESVSTNNRVQYEPAHLAPLREDSVLRELDREDKASDDEMMTPESERVQVEGG
MENSLLPYVSNILSPAGQIFMCPLCNKVFPSPHILQIHLSTHFREQDGIRSKPAADVNVPTCSLCGKTFS
CMYTLKRHERTHSGEKPYTCTQCGKSFQYSHNLSRHAVVHTREKPHACKWCERRFTQSGDLYRHIRKFHC
ELVNSLSVKSEALSLPTVRDWTLEDSSQELWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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