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Report for CCDS15608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15608.1 Public Mus musculus 1 Kctd3 23 108 98 CCDS HistoryNCBI Gene:226823Re-query CCDS DB by CCDS ID:15608.1Re-query CCDS DB by GeneID:226823See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15608.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085678.7 ENSMUSP00000082821.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085678.7Link to Ensembl Protein Viewer:ENSMUSP00000082821.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000085678Re-query CCDS DB by Protein ID:ENSMUSP00000082821
Original member Current member NCBI NM_172650.2 NP_766238.1 Accepted alive Link to Nucleotide Sequence:NM_172650.2Link to Protein Sequence:NP_766238.1Re-query CCDS DB by Nucleotide ID:NM_172650Re-query CCDS DB by Protein ID:NP_766238Link to BLAST:NP_766238.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766238.1 815 Q8BFX3-1 815 100% 0 0

Chromosomal Locations for CCDS 15608.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 188972125 188972683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188974066 188974204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188974287 188974471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188976611 188976707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188978497 188978652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188981225 188981395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188983010 188983126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188983207 188983294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188987516 188987631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188992563 188992753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188995742 188995832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188996400 188996540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188996962 188997042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 188997277 188997335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189000253 189000326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189001343 189001388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189001905 189001958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 189007530 189007612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2448 nt):
ATGGCGGGCGGGCATTGCGGCAGCTTCGCCGCGTCGGCGGCCAGCAGCGGGGAGATCGTGCAGCTGAATG
TG
GGGGGGACCAGATTCAGTACCTCTAGACAGACGCTCATGTGGATTCCAGATTCTTTTTTCTCCAGTTT
G
CTGAGTGGAAGAATTTCAACACTTCGAGATGAAACTGGTGCTATATTTATTGATAGGGACCCGGCAGCA
TTC
GCCCCCATTTTAAATTTTCTTCGGACAAAAGAACTCGACTTAAGGGGAGTCAGCATTAATGTTCTCA
GG
CACGAGGCAGAATTTTATGGGATCACTCCACTAGTGCGGAGGCTGCTGCTGTGTGAGGAGCTGGAGAG
G
TCATCCTGCGGCAGCGTCCTGTTCCACGGCTACTTGCCCCCGCCAGGCATTCCCAGTCGTAAAGTAACT
AAC
ACAGCTAGGTCCTCTGTGGATGCTAGGAATGGACTGAACTCTATGGAAGGAGAAGCCCGGGGAAACG
GG
ACACAGCCTGTGCTTGCAGGAAATGGAGAAGACACTATTCGGCTGGGAGTTCCAGTGGATCCAAGAAA
G
GTGCTAATAGTTGCTGGCCACCACAATTGGATTGTAGCTGCCTATGCGCATTTCGCTGTGTGTTACAGA
ATC
AAAGAGTCCTCAGGGTGGCAGCAGGTGTTTACAAGCCCTTACCTGGACTGGACCATCGAACGGGTGG
CT
TTAAATGCAAAGGTGGTTGGAGGTCCTCATGGAGACAAGGACAAAATGGTGGCTGTCGCCTCAGAGAG
C
AGCATCATCTTGTGGAGTGTTCAGGATGGAGGAAGTGGAAGTGAAATTGGTGTGTTCAGCCTCGGCGTT
CCT
GTAGATGCTCTCTTCTTCATTGGAAACCAGCTGGTGGCCACGAGTCACACGGGGAAGGTGGGCGTGT
GG
AACGCTGTCACGCAGCACTGGCAGGTGCAGGACGTTGTCCCAATAACCAGCTACGACACTGCAGGCTC
C
TTCCTCCTCCTGGGATGCAACAACGGATCAATATATTACATAGACATGCAGAAGTTCCCGTTGCGGATG
AAG
GACAACGACCTTCTCGTCACTGAGCTCTATCACGACCCCTCCAATGACGCCGTCACCGCGCTGAGCG
TT
TACCTCACTCCCAAGACAAGTGTCAGCGGAAACTGGATTGAGATCGCCTATGGTACGAGCTCTGGAGC
C
GTGCGAGTGATTGTGCAGCATCCGGAGACTGTCGGCTCAGGGCCTCAGCTCTTCCAGACATTCACCGTT
CAC
CGGAGCCCCGTGACCAAGATCATGCTGTCAGAGAAGCACCTGGTGTCAGTGTGTGCTGACAACAACC
AC
GTCCGCACCTGGACAGTGACACGATTCAGAGGGATGATCTCTACGCAGCCAGGCTCCACTCCTTTAGC
A
TCCTTCAAGATCCTGTCCTTGGAGGAGACAGAGAGCCATGGCAGCTATTCCTCTGGAAATGACATCGGG
CCT
TTTGGGGAACGAGATGATCAACAAGTATTTATCCAGAAAGTTGTTCCCATCACCAACAAACTGTTTG
TC
AGGCTGTCGTCGACAGGAAAAAGAATATGTGAGATCCAGGCTGTAGACTGCACTACAATCTCCTCCTT
C
ACCGTGAGGGAGTGTGAGGGCTCCAGCAGGATGGGCTCCCGGCCAAGGCGATACCTGTTCACTGGCCAC
ACC
AACGGCAGCATCCAGATGTGGGACCTGACCACAGCCATGGATATGGTCAACAAGACTGAGGACAAGG
AT
GCAGGCGGGCCCACTGAGGAGGAGCTGCTCAAGCTGCTGGACCAGTGTGATCTGAGCACGTCCCGCTG
T
GCCACTCCCAACATCAGCCCCGCCACCTCCGTGCTGCAGCACAGCCGCCTTCGAGAGTCCAGCTCCAGC
CTT
CAGCTCCAGCACCACGAAACCATCCACGAAGCGGCAACCTATGGTGCCACGCGGCCTTACCGAGAGA
GC
CCTTTGTTAGCCAGAGCACGGAGGACTGAGAGTTTCCACAGCTACAGGGACTTCCAGACTCTTAATCT
C
AACAGAAGCATAGAGAGACCTGTCCCTGAGAATGGTCACATGGGCCCAGCCCAGACTGAGGTGAAAGGG
GCA
GCAGGGGAGTGCGCTATGTCTGAGAGGAGGTCCCCTGGCACAGAGGTAAGATGTGGGCGAGAGTCAG
AT
GGGGGACTGGAGGTGCATAGAACAGCAGAGGGTTTGTCAGAGCCCAAGAAAAGGTCAGCAGAGGATGA
A
AATGAGCATAAAGTGGAGTTCCGAAAGAAAGGGTTTGAAGCAGGAGGATTTCTTGGAAGAAAGAAAGTT
CCC
TATCTGGCATCCTCACCAAGTACCTCTGATGGAGGGACCGACTCCCCTGGTACAGCATCCCCGTCTC
CA
ACCAAGACCACTCCGTCACCTCGGCACAAAAAGAGCGATTCCTCTGGCCAAGAGTACAGCTTGTGA


Translation (815 aa):
MAGGHCGSFAASAASSGEIVQLNVGGTRFSTSRQTLMWIPDSFFSSLLSGRISTLRDETGAIFIDRDPAA
F
APILNFLRTKELDL
RGVSINVLRHEAEFYGITPLVRRLLLCEELERSSCGSVLFHGYLPPPGIPSRKVT
N
TARSSVDARNGLNSMEGEARGNGTQPVLAGNGEDTIRL
GVPVDPRKVLIVAGHHNWIVAAYAHFAVCYR
I
KESSGWQQVFTSPYLDWTIERVALNAKVVGGPHGDKDKMVAVASESSIILWSVQDGGSGSEI
GVFSLGV
P
VDALFFIGNQLVATSHTGKVGVWNAVTQHWQ
VQDVVPITSYDTAGSFLLLGCNNGSIYYIDMQKFPLRM
K
DNDLLVTELYHDPSNDAVTALSVYLTPKT
SVSGNWIEIAYGTSSGAVRVIVQHPETVGSGPQLFQTFTV
H
RSPVTKIMLSEKHLVS
VCADNNHVRTWTVTRFRGMISTQPGSTPLASFKILSLEETESHGSYSSGNDIG
P
FGERDDQQVFIQKVVPITNKLFVRLSSTGK
RICEIQAVDCTTISSFTVRECEGSSRMGSRPRRYLFTGH
T
NGSIQMWDLTTAMDMVNKTEDK
DAGGPTEEELLKLLDQCDLSTSRCATPNISPATSVLQHSRLRESSSS
L
QLQHHETIHEAATYGATRPYRESPLLARARRTESFHSYRDFQTLNLNRSIERPVPENGHMGPAQTEVKG
A
AGECAMSERRSPGTEVRCGRESDGGLEVHRTAEGLSEPKKRSAEDENEHKVEFRKKGFEAGGFLGRKKV
P
YLASSPSTSDGGTDSPGTASPSPTKTTPSPRHKKSDSSGQEYSL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser