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Report for CCDS15657.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15657.1 Public Mus musculus 2 Prpf18 23 108 98 CCDS HistoryNCBI Gene:67229Re-query CCDS DB by CCDS ID:15657.1Re-query CCDS DB by GeneID:67229See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15657.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035721.13 ENSMUSP00000041428.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035721.13Link to Ensembl Protein Viewer:ENSMUSP00000041428.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035721Re-query CCDS DB by Protein ID:ENSMUSP00000041428
Original member Current member EBI ENSMUST00000152362.6 ENSMUSP00000116495.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000152362.6Link to Ensembl Protein Viewer:ENSMUSP00000116495.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000152362Re-query CCDS DB by Protein ID:ENSMUSP00000116495
Original member Current member NCBI NM_026045.4 NP_080321.2 Accepted alive Link to Nucleotide Sequence:NM_026045.4Link to Protein Sequence:NP_080321.2Re-query CCDS DB by Nucleotide ID:NM_026045Re-query CCDS DB by Protein ID:NP_080321Link to BLAST:NP_080321.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080321.2 342 Q8BM39-1 342 100% 0 0

Chromosomal Locations for CCDS 15657.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 4624446 4624526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4633433 4633588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4635631 4635702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4635828 4635968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4637148 4637216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4638849 4638995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4643651 4643764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4645569 4645673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4648241 4648318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4651916 4651981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1029 nt):
ATGGACATCCTGAAATCCGAGATTCTGCGGAAGCGGCAGCTGGTGGAGGACAGGAACCTGCTGGTGGAAA
AT
AAAAAATACTTCAAGCGGAGTGAACTGGCGAGAAAAGAAGAGGAAGCGTATTACGAAAGATGTGGCTA
C
AAGATACAGCCAAAAGAGGATGACCAGAAACCACTAACATCGTCAAATCCAGTGCTGGAACTTGAACTA
GCA
GAGGAAAAACTTCCTATGACTCTTTCTAGGCAAGAGGTCATCAGAAGACTGAGAGAAAGAGGAGAGC
CG
ATTAGACTGTTTGGGGAAACCGACTATGATGCTTTCCAGCGTTTAAGGAAGATAGAGATTCTTACACC
A
GAAGTTAACAAGGGCTTAAGGAATGATCTGAAAGCAGCTTTGGACAAGATTGACCAGCAGTACTTGAAT
GAG
ATTGTGGGTGGTCAGGAACCTGGAGAGGAGGACACCCAGAATGACCTGAAAGTTCACGAGGAAAACA
CC
ACCATTGAAGAATTAGAGGCACTGGGGGAGTCCTTAGGGAAAGGTGACGATCATAAGGACATGGACAT
C
ATCACCAAGTTCCTGAAGTTTCTTCTTGGTGTTTGGGCTAAAGAACTGAATGCCAGAGAGGACTACGTG
AAA
CGCAGTGTGCAGGGCAAACTGAACAGTGCTACCCAGAAGCAGACGGAGTCCTACCTCAGACCGCTTT
TC
AGAAAGCTCCGGAAAAGGAATCTTCCTGCTGATATTAAAGAATCAATAACAGATATTATTAAGTTCAT
G
TTGCAGAGAGAGTACGTGAAGGCGAATGATGCTTACCTTCAGATGGCCATTGGCAATGCCCCCTGGCCT
ATC
GGTGTCACCATGGTTGGTATCCATGCCAGAACTGGCAGGGAGAAGATCTTTTCCAAGCATGTTGCGC
AT
GTTTTAAATGATGAAACCCAACGGAAATACATTCAGGGACTGAAGAGGTTAATGACAATTTGCCAGAA
G
CACTTTCCTACAGATCCGTCAAAATGTGTGGAGTATAATGCACTATGA


Translation (342 aa):
MDILKSEILRKRQLVEDRNLLVENKKYFKRSELARKEEEAYYERCGYKIQPKEDDQKPLTSSNPVLELEL
A
EEKLPMTLSRQE
VIRRLRERGEPIRLFGETDYDAFQRLRKIEILTPEVNKGLRNDLKAALDKIDQQYLN
E
IVGGQEPGEEDTQNDLKVHEENTTIEELE
ALGESLGKGDDHKDMDIITKFLKFLLGVWAKELNAREDYV
K
RSVQGKLNSATQKQTESYLRPLFRKLRKR
NLPADIKESITDIIKFMLQREYVKANDAYLQMAIGNAPWP
I
GVTMVGIHARTGREKIFSKHVAHVLNDETQRKYIQ
GLKRLMTICQKHFPTDPSKCVEYNAL



Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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