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Report for CCDS15710.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15710.1 Public Mus musculus 2 Commd3 23 108 98 CCDS HistoryNCBI Gene:12238Re-query CCDS DB by CCDS ID:15710.1Re-query CCDS DB by GeneID:12238See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15710.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000061158.4 ENSMUSP00000049882.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000061158.4Link to Ensembl Protein Viewer:ENSMUSP00000049882.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000061158Re-query CCDS DB by Protein ID:ENSMUSP00000049882
Original member Current member EBI ENSMUST00000171845.7 ENSMUSP00000127385.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171845.7Link to Ensembl Protein Viewer:ENSMUSP00000127385.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171845Re-query CCDS DB by Protein ID:ENSMUSP00000127385
Original member Current member NCBI NM_147778.4 NP_680087.1 Accepted alive Link to Nucleotide Sequence:NM_147778.4Link to Protein Sequence:NP_680087.1Re-query CCDS DB by Nucleotide ID:NM_147778Re-query CCDS DB by Protein ID:NP_680087Link to BLAST:NP_680087.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_680087.1 195 Q63829 195 100% 0 0

Chromosomal Locations for CCDS 15710.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 18672465 18672603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18673895 18674006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18674125 18674188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18674281 18674315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18674656 18674716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18674809 18674865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18674950 18675009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 18675867 18675926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (588 nt):
ATGGAGCTCTCGGAGTCTGTGCAAAGAGGCATCCAGACGCTGGCGGATCCCGGTTCCTTTGACTCCAACG
CCTTCGCGCTTCTCCTCCGGGCGGCTTTCCAGAGCCTGCTGGACGCCCGGGCGGACGAGGCCGCGCTAGA
TCACCCATACTTGAAACAGATCGACCCAGTGGTTTTAAAGCATTGTCATGCAGCAGCTGCAACTTGCATC
CTGGAGGCAGGAAAGCACCAAGTTGACAAGTCTACTCTAAGCACTTATTTAGAAGACTGTAAATTTGACC
GAGAGCGAATAGAACTGTTTTGCACCGAGTATCAGAACAATAAGAATTCTCTAGAAACCCTACTGGGAAG
TATAGGCAGATCTCTCCCTCATATAACTGATGTTTCTTGGCGCTTGGAGTACCAGATAAAGACCAACCAA
CTTCATAAGATGTACCGACCTGGATATTTGGTGACCTTAAATGTAGAGAACAATGATTCCCAATCCTACC
CAGAGATTAATTTTAGTTGCAACATGGAACAGTTACAGGACTTGGTGGGGAAACTTAAGGATGCTTCAAA
AAGCCTGGAAAGAGCAACTCAGTTGTAA

Translation (195 aa):
MELSESVQRGIQTLADPGSFDSNAFALLLRAAFQSLLDARADEAALDHPYLKQIDPVVLKHCHAAAATCI
LEAGKHQVDKSTLSTYLEDCKFDRERIELFCTEYQNNKNSLETLLGSIGRSLPHITDVSWRLEYQIKTNQ
LHKMYRPGYLVTLNVENNDSQSYPEINFSCNMEQLQDLVGKLKDASKSLERATQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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