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Report for CCDS15721.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15721.1 Public Mus musculus 2 Thnsl1 23 108 98 CCDS HistoryNCBI Gene:208967Re-query CCDS DB by CCDS ID:15721.1Re-query CCDS DB by GeneID:208967See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15721.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102951.1 ENSMUSP00000100016.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102951.1Link to Ensembl Protein Viewer:ENSMUSP00000100016.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102951Re-query CCDS DB by Protein ID:ENSMUSP00000100016
Original member Current member EBI ENSMUST00000102952.7 ENSMUSP00000100017.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102952.7Link to Ensembl Protein Viewer:ENSMUSP00000100017.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102952Re-query CCDS DB by Protein ID:ENSMUSP00000100017
Original member Current member NCBI NM_001001297.2 NP_001001297.1 Accepted alive Link to Nucleotide Sequence:NM_001001297.2Link to Protein Sequence:NP_001001297.1Re-query CCDS DB by Nucleotide ID:NM_001001297Re-query CCDS DB by Protein ID:NP_001001297Link to BLAST:NP_001001297.1
Original member Current member NCBI NM_001362772.1 NP_001349701.1 Accepted alive Link to Nucleotide Sequence:NM_001362772.1Link to Protein Sequence:NP_001349701.1Re-query CCDS DB by Nucleotide ID:NM_001362772Re-query CCDS DB by Protein ID:NP_001349701Link to BLAST:NP_001349701.1
Original member Current member NCBI NM_001362773.1 NP_001349702.1 Accepted alive Link to Nucleotide Sequence:NM_001362773.1Link to Protein Sequence:NP_001349702.1Re-query CCDS DB by Nucleotide ID:NM_001362773Re-query CCDS DB by Protein ID:NP_001349702Link to BLAST:NP_001349702.1

Chromosomal Locations for CCDS 15721.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 21213000 21213680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (681 nt):
ATGATGGGAATCCCTATTCGAAAATTTATCTGTGCCTCTAATCAGAACCACGTTTTGACTGACTTCATAA
AAACTGGACATTATGATCTAAGGAATAGGAAATTAGCACAAACCTTTTCACCATCAATAGATATTCTCAA
GTCTTCCAACCTGGAGCGACATTTATACTTGATGGCTAACAAAGACGGACAGTTAATGGCAAATTTATAC
CATCAGTTAGAGAGTCAGCTTCACTTCCGGATTGAGAAGATGCTGGTCGAGAAGCTGCAGCAAGAGTTTG
TTGCCGACTGGTGCTCTGAGGGAGAATGCCTCGCAGCTATCAGCACTACCTACAATGCATCAGGCTATAT
TTTGGATCCACATACCGCTGTTGCAAAAGTGGTTGCAGACAAGATGCAAGACAAAAGCTGCCCAGTGCTC
ATTGCATCCACAGCTCACTACTCCAAGTTTGCCCCTGCTATCATGCAGGCACTGGGGATTAAAGAACTCA
ACCAGACGTCGTCCAGCCAGCTTTACTTACTGAGCTCGTACAATGCATTGCCCCCTCCTCACGAGGCTCT
GCTAGAGAGAATGAAGCAGAAGGAGAAGATGGATTACCAGGTTTGTGTAGCTGATGTGGATGTCCTGAAG
AGTCATGCAGAAAAACTCATCCAAAATTGGTTTGTAAGGAAGTCTGAGTAG

Translation (226 aa):
MMGIPIRKFICASNQNHVLTDFIKTGHYDLRNRKLAQTFSPSIDILKSSNLERHLYLMANKDGQLMANLY
HQLESQLHFRIEKMLVEKLQQEFVADWCSEGECLAAISTTYNASGYILDPHTAVAKVVADKMQDKSCPVL
IASTAHYSKFAPAIMQALGIKELNQTSSSQLYLLSSYNALPPPHEALLERMKQKEKMDYQVCVADVDVLK
SHAEKLIQNWFVRKSE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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