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Report for CCDS15730.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15730.1 Public Mus musculus 2 Spopl 23 108 98 CCDS HistoryNCBI Gene:76857Re-query CCDS DB by CCDS ID:15730.1Re-query CCDS DB by GeneID:76857See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15730.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000132484.6 ENSMUSP00000114974.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000132484.6Link to Ensembl Protein Viewer:ENSMUSP00000114974.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000132484Re-query CCDS DB by Protein ID:ENSMUSP00000114974
Original member Current member NCBI NM_029773.2 NP_084049.2 Accepted alive Link to Nucleotide Sequence:NM_029773.2Link to Protein Sequence:NP_084049.2Re-query CCDS DB by Nucleotide ID:NM_029773Re-query CCDS DB by Protein ID:NP_084049Link to BLAST:NP_084049.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084049.2 392 Q2M2N2-1 392 100% 0 0

Chromosomal Locations for CCDS 15730.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 23511316 23511460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23515005 23515058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23515148 23515290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23517829 23517951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23537328 23537383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23537461 23537638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23543197 23543324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23544746 23544897 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23545153 23545274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 23545444 23545521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGTCTCGGGAACCTACTCCACCTCTGCCTGGAGATATGTCTACTAGTCCTGTTGCAGAAAGCTGGTGTT
ACACACAGGTTAAAGTAGTGAAATTTTCCTACATGTGGACTATTAATAACTTCAGTTTTTGTAGAGAAGA
AATGGGTGAAGTGTTAAAGAGTTCAACGTTTTCTTCAGGCCCAAATGATAAAATGAAATGGTGCCTGAGG
GTAAACCCAAAGGGATTAGATGACGAAAGTAAAGACTATTTGTCCTTATATTTGCTCCTAGTCAGCTGCC
CAAAAAGTGAGGTTCGAGCTAAATTCAAATTCTCTCTTCTCAATGATAAAAGGGAAGAAACAAAAGCAAT
GGAAAGCCAAAGAGCATATCGATTTGTACAGGGGAAGGACTGGGGATTTAAAAAATTCATTAGAAGGGAT
TTTTTGCTTGATGAAGCTAATGGTCTCCTTCCAGATGACAAGCTTACGTTATTCTGTGAGGTGAGTGTGG
TCCAAGATTCAGTAAATGTATCAGGACACACTAGTACAAACACTTTGAAGGTGCCAGAATGTCGACTAGC
AGAAGATTTAGGTAATCTCTGGGAAAACACAAGATTTACAGATTGCTGCTTTTTTGTGAGAGGAAAAGAA
TTCAAAGCTCATAAGTCTGTGCTTGCAGCTCGATCCCCAGTTTTTAATGCAATGTTTGAACATGAAATGG
AAGAATGCACAAAGAATCGAGTGGAAATAAATGATTTAGACCCTGAGGTATTTAAAGAAATGATGAGATT
TGTTTACACAGGAAAAGCACCAAATCTTGATAAAATGGCTGACAACTTGTTGGCAGCTGCAGACAAATAT
GCACTGGAACGGCTGAAGGTCATGTGTGAAGAAGCTTTGTGTAGTAACCTCTCAGTAGAAAATGTTGCTG
ATACCCTTGTCCTTGCAGATTTGCACAGTGCAGAACAGTTGAAAGCCCAGGCAATAGACTTTATTAATAG
GTGCAGTGTTCTTCGACAACTTGGGTGTAAGGATGGGAAAAACTGGAACAACAACCAAGCAACTGACATA
ATGGAAACATCGGGGTGGAAGTCCATGATTCAGTCTCATCCCCATTTAGTGGCAGAAGCGTTCCGAGCAC
TAGCATCTTCACAGTGTCCACAGTTTGGTATTCCACGCAAAAGGTTAAAGCAGTCTTGA

Translation (392 aa):
MSREPTPPLPGDMSTSPVAESWCYTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSSGPNDKMKWCLR
VNPKGLDDESKDYLSLYLLLVSCPKSEVRAKFKFSLLNDKREETKAMESQRAYRFVQGKDWGFKKFIRRD
FLLDEANGLLPDDKLTLFCEVSVVQDSVNVSGHTSTNTLKVPECRLAEDLGNLWENTRFTDCCFFVRGKE
FKAHKSVLAARSPVFNAMFEHEMEECTKNRVEINDLDPEVFKEMMRFVYTGKAPNLDKMADNLLAAADKY
ALERLKVMCEEALCSNLSVENVADTLVLADLHSAEQLKAQAIDFINRCSVLRQLGCKDGKNWNNNQATDI
METSGWKSMIQSHPHLVAEAFRALASSQCPQFGIPRKRLKQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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