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Report for CCDS15775.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15775.1 Public Mus musculus 2 Paxx 23 108 98 CCDS HistoryNCBI Gene:227622Re-query CCDS DB by CCDS ID:15775.1Re-query CCDS DB by GeneID:227622See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15775.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114261.8 ENSMUSP00000109899.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114261.8Link to Ensembl Protein Viewer:ENSMUSP00000109899.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114261Re-query CCDS DB by Protein ID:ENSMUSP00000109899
Original member NCBI NM_153557.1 NP_705785.1 Updated not alive Link to Nucleotide Sequence:NM_153557.1Link to Protein Sequence:NP_705785.1Re-query CCDS DB by Nucleotide ID:NM_153557Re-query CCDS DB by Protein ID:NP_705785
Current member NCBI NM_153557.2 NP_705785.1 Accepted alive Link to Nucleotide Sequence:NM_153557.2Link to Protein Sequence:NP_705785.1Re-query CCDS DB by Nucleotide ID:NM_153557Re-query CCDS DB by Protein ID:NP_705785Link to BLAST:NP_705785.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705785.1 205 Q8K0Y7 205 100% 0 0

Chromosomal Locations for CCDS 15775.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25459662 25459701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25459775 25459859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25460009 25460074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25460167 25460357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25460445 25460494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25460655 25460715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25460787 25460911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGCTCCTCCGTTGTTGTCGCTGCCGCTTTGTATTCTGCCGCCGGGTTCGGGCTCCCCCCGCCTGGTGT
GCTACTGCGAGCGGGATAGTGGTGGAGACGGGGACCGCGACGACTTCAACCTCTATGTGACGGACGCCGC
CGAGCTCTGGAGCACCTGCTTCTCGCCTGACAGCCTGGCGAGGCTCAAAGCCCGATTTGGCCTAAGTGGG
GCTGAAGATATCCATTCCCGGTTCAGGGCAGCCTGCCAACAGCAGGCAGTAACTGTAAGCCTGCAAGAAG
ACAGAGCATTGATAACCCTTTCAGGGGATACCCCTGCCCTGGCCTTTGACCTCTCCAAGGTGCCCAGCCC
GGAGGCAGCCCCCAGGCTGCAGGCTTTGACTCTCAGCCTGGCAGAGCATGTATGCAACCTAGAGAGGCGG
CTGGCAGCTGCAGAAGAGACCATCACTAGCCCCAAGAAGAACACCCAGCCAGCAGGCACTCAGTTCTTAC
CAGAACTTGATCACCAGAGAGGCAGCTCTGGGCCTGGGGTCAGGAGACGGTGTCCAGGGGAGTCTCTCAT
TAACCCTGGCTTCAAAAGTAAGAAACCAGCTGCTGGTGTAGACTTTGATGAGACCTGA

Translation (205 aa):
MAPPLLSLPLCILPPGSGSPRLVCYCERDSGGDGDRDDFNLYVTDAAELWSTCFSPDSLARLKARFGLSG
AEDIHSRFRAACQQQAVTVSLQEDRALITLSGDTPALAFDLSKVPSPEAAPRLQALTLSLAEHVCNLERR
LAAAEETITSPKKNTQPAGTQFLPELDHQRGSSGPGVRRRCPGESLINPGFKSKKPAAGVDFDET


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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