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Report for CCDS15780.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15780.1 Public Mus musculus 2 Edf1 23 108 98 CCDS HistoryNCBI Gene:59022Re-query CCDS DB by CCDS ID:15780.1Re-query CCDS DB by GeneID:59022See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15780.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000015236.3 ENSMUSP00000015236.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000015236.3Link to Ensembl Protein Viewer:ENSMUSP00000015236.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000015236Re-query CCDS DB by Protein ID:ENSMUSP00000015236
Original member Current member NCBI NM_021519.2 NP_067494.1 Accepted alive Link to Nucleotide Sequence:NM_021519.2Link to Protein Sequence:NP_067494.1Re-query CCDS DB by Nucleotide ID:NM_021519Re-query CCDS DB by Protein ID:NP_067494Link to BLAST:NP_067494.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_067494.1 148 Q9JMG1 148 100% 0 0

Chromosomal Locations for CCDS 15780.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 25557952 25558029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25560151 25560202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25560540 25560700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25560969 25561062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 25561851 25561912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (447 nt):
ATGGCCGAGAGTGACTGGGACACCGTGACGGTGCTGCGCAAGAAGGGCCCCACGGCCGCACAGGCCAAGT
CTAAGCAGGCCATCTTAGCGGCTCAGCGACGAGGAGAAGATGTGGAGACATCCAAGAAATGGGCTGCTGG
CCAGAACAAGCAGCATTCCATTACTAAAAACACAGCCAAGCTCGACCGGGAGACCGAGGAGCTGCATCAC
GACAGGGTGACCCTGGAGGTGGGCAAAGTGATCCAGCGGGGCCGGCAGAGCAAAGGCCTGACCCAGAAGG
ACCTGGCCACGAAAATCAATGAGAAGCCGCAAGTCATCGCAGACTATGAAAGTGGACGGGCCATTCCGAA
TAACCAGGTTTTGGGCAAAATTGAGAGAGCCATCGGCCTCAAGCTCCGGGGGAAGGACATCGGGAAGCCT
ATCGAGAAGGGGCCGAAGGCGAAATGA

Translation (148 aa):
MAESDWDTVTVLRKKGPTAAQAKSKQAILAAQRRGEDVETSKKWAAGQNKQHSITKNTAKLDRETEELHH
DRVTLEVGKVIQRGRQSKGLTQKDLATKINEKPQVIADYESGRAIPNNQVLGKIERAIGLKLRGKDIGKP
IEKGPKAK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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