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Report for CCDS15803.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15803.2 Public Mus musculus 2 Entr1 23 108 98 CCDS HistoryNCBI Gene:68112Re-query CCDS DB by CCDS ID:15803.2Re-query CCDS DB by GeneID:68112See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 15803.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 15803.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114102.9 ENSMUSP00000109737.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114102.9Link to Ensembl Protein Viewer:ENSMUSP00000109737.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000114102Re-query CCDS DB by Protein ID:ENSMUSP00000109737
Original member Current member NCBI NM_026563.3 NP_080839.2 Accepted alive Link to Nucleotide Sequence:NM_026563.3Link to Protein Sequence:NP_080839.2Re-query CCDS DB by Nucleotide ID:NM_026563Re-query CCDS DB by Protein ID:NP_080839Link to BLAST:NP_080839.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080839.2 432 A2AIW0-1 432 100% 0 0

Chromosomal Locations for CCDS 15803.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 26383598 26383694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26384682 26384821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26385083 26385145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26385498 26385609 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26385990 26386063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26386904 26387311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26387556 26387671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26388492 26388560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26388916 26389065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 26389149 26389218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1299 nt):
ATGTCGGGCTACGCGCGGCGGCAGGGCGCGCCCCCTCTATCGCGGACGCGGAGCCTTGTGGTTCCCGACG
CTCCTGCGTTCTATGAGCGCCGGTCTTGTCTCCCCCAGCTAGACTGTGAGCGCCCCCATGGCGGGGACCT
GCACCCCCATCTCTTCGGCTTTCGGCCGACGTTTATGTGCTATGTGCCCAGCCCGGTGCTGGCTTCGGTA
GGAGACACAGGTTTTGGCTATGGAAAGGGGAAATGTACTAACCAAGGTCCTTCGGGAGCCCCTGAGACGC
GCTTTGGAGGTGACAAACTTGAAGACCTTGAAGAAGCCAATCCATTCTCCTTCAAAGAGTTTTTGAAAAC
CAAGAACCTCAGCCTGTCAAAAGAAGACACGACCACCAGCCGAATTTACCCAAAGGAAGCCTCAAGGCAC
CCACTGGGACTAGAGCACAGCTCCCCTGCCTCCCAGCTCATGGGATATGGCCTGGAATCTCAGCAGCCAT
TTTTTGAAGACCCAACAAGAGCCAGCAACCTAGAGGAGGATGAAGATGATGGATGGAATATAACCTACTT
GCCATCTGCCGTGGATCAGACTCATTCCTCTAGAGACACACAGGACTCACCGCCCTGTGACACCTACCTT
TCCTTTTTCTCCAACTCGTCAGAGCTGGCATGTCCCGAGTCTTTGCCCCCATGGACGCTGAGTGACACCG
ACTCCAGGATCTCCCCAGCGTCTCCAGCTGGGAGTCCTAATGCAGACTTTGCAGCTCATGAAGAATCCCT
AGGGGACAGACACCTGCGGACGCTGCAGATAAGTTATGAAGCACTGAAAGATGAAAACTCTAAGCTCAGA
AGAAAGCTAAATGAGGTTCAGAGCTTCTCTGAAACTCAAACAGAAATGGTGAGGACACTCGAACGGAAGT
TGGAGGCGAAGATGATCAAGGAGGAGAGTGACTTCCATGACCTCGAGTCAGTAGTCCAGCAAGTCGAACA
GAACCTTGAACTGATGACCAAACGGGCTGTAAAAGCAGAAAATCATGTCTTGAAGCTGAAACAGGAAATA
AATTTGCTTCAGGCCCAGCTCTCAAACTTGAGGCGAGAAAATGAAGCCCTGCGGTCAGGCCAGGGTGCCA
GCCTTTCTGTAGTGAAGCAGAACACCGACGTGGCCTTGCAGAACCTCCACCTTGTCATGAACAGTGCACA
CGCATCCATAAAGCAGCTGGTGTCTGGGGCAGACACACTGAACCTTGTTGCTGAAATCCTCAAGTCTATC
GACAGAATTAGTGAAGTTAAAGATGAGGTGGACTCTTGA

Translation (432 aa):
MSGYARRQGAPPLSRTRSLVVPDAPAFYERRSCLPQLDCERPHGGDLHPHLFGFRPTFMCYVPSPVLASV
GDTGFGYGKGKCTNQGPSGAPETRFGGDKLEDLEEANPFSFKEFLKTKNLSLSKEDTTTSRIYPKEASRH
PLGLEHSSPASQLMGYGLESQQPFFEDPTRASNLEEDEDDGWNITYLPSAVDQTHSSRDTQDSPPCDTYL
SFFSNSSELACPESLPPWTLSDTDSRISPASPAGSPNADFAAHEESLGDRHLRTLQISYEALKDENSKLR
RKLNEVQSFSETQTEMVRTLERKLEAKMIKEESDFHDLESVVQQVEQNLELMTKRAVKAENHVLKLKQEI
NLLQAQLSNLRRENEALRSGQGASLSVVKQNTDVALQNLHLVMNSAHASIKQLVSGADTLNLVAEILKSI
DRISEVKDEVDS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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