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Report for CCDS15823.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15823.1 Public Mus musculus 2 Mymk 23 108 98 CCDS HistoryNCBI Gene:66139Re-query CCDS DB by CCDS ID:15823.1Re-query CCDS DB by GeneID:66139See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15823.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000009358.8 ENSMUSP00000009358.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000009358.8Link to Ensembl Protein Viewer:ENSMUSP00000009358.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000009358Re-query CCDS DB by Protein ID:ENSMUSP00000009358
Original member Current member NCBI NM_025376.3 NP_079652.1 Accepted alive Link to Nucleotide Sequence:NM_025376.3Link to Protein Sequence:NP_079652.1Re-query CCDS DB by Nucleotide ID:NM_025376Re-query CCDS DB by Protein ID:NP_079652Link to BLAST:NP_079652.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079652.1 221 Q9D1N4 221 100% 0 0

Chromosomal Locations for CCDS 15823.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27062188 27062337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27062702 27062818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27066291 27066439 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27067353 27067467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27071881 27072015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (666 nt):
ATGGGGACAGTTGTAGCCAAACTGCTCCTGCCTACCCTCAGCAGCCTGGCCTTCCTCCCGACAGTGAGCA
TCGCTACCAAGAGGCGTTTCTACATGGAGGCCATGGTCTACCTCTTCACCATGTTCTTTGTGGCGTTCTC
CCATGCCTGTGATGGGCCTGGTTTGTCTGTGCTGTGCTTCATGCGCCGTGACATTCTGGAGTACTTCAGC
ATCTATGGAACAGCCCTGAGCATGTGGGTCTCCCTGATGGCACTGGCCGACTTTGATGAACCCCAGAGAT
CGACCTTCACAATGCTTGGCGTCCTTACCATCGCTGTGCGGACTTTTCATGACCGCTGGGGTTACGGGGT
ATACTCCGGTCCCATAGGCACGGCCACCCTCATCATTGCTGTAAAGTGGCTGAAGAAGATGAAAGAGAAG
AAGGGCCTGTACCCCGACAAGAGCATCTACACCCAGCAGATAGGCCCCGGCCTGTGCTTTGGGGCCCTGG
CCCTGATGCTTCGATTCTTCTTTGAGGAATGGGATTACACCTACGTCCACAGCTTCTACCACTGTGCCCT
GGCCATGTCCTTTGTCCTGCTGCTGCCCAAGGTCAACAAGAAGGCTGGGAACGCAGGGGCCCCCGCCAAG
CTGACCTTCTCCACCCTCTGCTGCACTTGTGTCTGA

Translation (221 aa):
MGTVVAKLLLPTLSSLAFLPTVSIATKRRFYMEAMVYLFTMFFVAFSHACDGPGLSVLCFMRRDILEYFS
IYGTALSMWVSLMALADFDEPQRSTFTMLGVLTIAVRTFHDRWGYGVYSGPIGTATLIIAVKWLKKMKEK
KGLYPDKSIYTQQIGPGLCFGALALMLRFFFEEWDYTYVHSFYHCALAMSFVLLLPKVNKKAGNAGAPAK
LTFSTLCCTCV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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