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Report for CCDS15861.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15861.1 Public Mus musculus 2 Odf2 23 108 98 CCDS HistoryNCBI Gene:18286Re-query CCDS DB by CCDS ID:15861.1Re-query CCDS DB by GeneID:18286See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15861.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028128.12 ENSMUSP00000028128.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028128.12Link to Ensembl Protein Viewer:ENSMUSP00000028128.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028128Re-query CCDS DB by Protein ID:ENSMUSP00000028128
Original member Current member EBI ENSMUST00000113763.7 ENSMUSP00000109392.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113763.7Link to Ensembl Protein Viewer:ENSMUSP00000109392.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113763Re-query CCDS DB by Protein ID:ENSMUSP00000109392
Original member Current member EBI ENSMUST00000113764.3 ENSMUSP00000109393.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113764.3Link to Ensembl Protein Viewer:ENSMUSP00000109393.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000113764Re-query CCDS DB by Protein ID:ENSMUSP00000109393
Original member NCBI NM_013615.3 NP_038643.1 Updated not alive Link to Nucleotide Sequence:NM_013615.3Link to Protein Sequence:NP_038643.1Re-query CCDS DB by Nucleotide ID:NM_013615Re-query CCDS DB by Protein ID:NP_038643
Current member NCBI NM_013615.4 NP_038643.1 Accepted alive Link to Nucleotide Sequence:NM_013615.4Link to Protein Sequence:NP_038643.1Re-query CCDS DB by Nucleotide ID:NM_013615Re-query CCDS DB by Protein ID:NP_038643Link to BLAST:NP_038643.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038643.1 638 A3KGV1-6 638 100% 0 0

Chromosomal Locations for CCDS 15861.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 29890971 29891002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29892186 29892276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29893444 29893512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29901077 29901247 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29902181 29902341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29903321 29903450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29903976 29904107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29912569 29912640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29914231 29914302 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29914394 29914510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29914734 29914919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29915208 29915317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29917610 29917745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29920775 29920885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29921004 29921108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 29922213 29922434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1917 nt):
ATGTCTGCCTCATCCTCAGGCGGCTCCCCCAGGTTTCCATCGTGTGGGAAGAACGGAGTAACGAGTCTCA
CACAGAAAAAAGTCTTGAGAACACCTTGTGGCGCACCCAGTGTAACTGTTACGAAATCTCATAAGCGCGG
AATGAAAGGGGACACCGTGAATGTACGGCGGAGTGTCCGGGTGAAAACCAAGAATCCACCTCATTGCCTG
GAGATCACACCACCATCTTCAGAAAAGCTGGTCTCGGTGATGCGATTAAGTGACCTTTCTACAGAAGACG
ACGATTCAGGTCACTGTAAAATGAACCGTTACGATAAGAAGATTGACAGTCTAATGAACGCGGTCGGTTG
TCTCAAATCTGAGGTCAAGATGCAGAAAGGTGAACGCCAAATGGCCAAAAGGTTCCTGGAGGAGAGGAAG
GAAGAGCTGGAGGAGGTGGCACACGAGCTTGCAGAGACGGAGCATGAGAACACGGTGCTCAGACACAACA
TCGAGCGTATCAAGGAGGAGAAGGACTTCACCATGCTTCAAAAGAAACACCTCCAGCAGGAGAAGGAATG
CCTCATGTCCAAACTAGTGGAGGCTGAAATGGATGGAGCAGCTGCTGCCAAGCAGGTCATGGCCTTGAAG
GATACCATCGGGAAGCTGAAAACCGAGAAACAGATGACTTGCACCGACATCAACACCTTAACAAGGCAGA
AGGAACTTCTCCTGCAGAAGCTGAGTACCTTTGAGGAGACCAATCGCACCCTCCGAGATCTGTTGAGGGA
ACAGCACTGCAAAGAGGATTCCGAGAGACTAATGGAGCAACAAGGTACATTACTGAAGCGTCTGGCAGAG
GCAGACTCAGAGAAAGCGCGCCTGCTGTTACTACTGCAAGACAAGGACAAGGAGGTGGAAGAACTCCTCC
AGGAGATACAATGTGAAAAGGCTCAAGCAAAGACAGCGTCTGAGCTTTCCAAGTCCATGGAGTCCATGCG
GGGGCATTTGCAGGCACAGCTTCGCTGCAAAGAGGCTGAGAACAGTCGCCTGTGCATGCAGATCAAGAAC
TTAGAGCGCAGTGGGAACCAGCATAAGGCGGAAGTAGAGGCCATCATGGAGCAGCTAAAGGAACTGAAGC
AGAAGGGAGACCGAGACAAAGAGACCCTAAAGAAGGCCATCCGAGCCCAGAAAGAGCGAGCCGAGAAGAG
TGAGGAGTATGCCGAGCAGCTGCATGTGCAACTGGCCGACAAGGACCTTTATGTTGCTGAAGCTTTATCT
ACTCTGGAGTCTTGGAGGAGCCGTTACAACCAGGTTGTGAAGGACAAAGGAGATCTTGAGTTGGAGATTA
TCGTCCTAAATGACCGGGTGACAGATCTTGTAAACCAACAACAAAGCTTGGAGGAGAAGATGCGGGAAGA
CCGGGACAGCTTGGTAGAGAGGCTGCACCGGCAGACGGCTGAGTACTCTGCATTCAAGCTAGAGAACGAG
AGGCTCAAGGCTAGCTTTGCCCCTATGGAGGACAAGCTCAACCAGGCTCACTTGGAGGTTCAGCAGCTGA
AGGCGTCAGTGAAGAACTACGAGGGGATGATAGACAACTACAAGAGCCAGGTGATGAAAACAAGATTGGA
GGCTGATGAAGTGGCTGCACAGCTAGAGCGCTGCGACAAAGAGAACAAGATGCTTAAAGACGAGATGAAC
AAAGAGATCGAGGCGGCCCGTCGGCAGTTCCAGTCACAGCTGGCTGACCTACAACAGCTGCCTGACATCC
TCAAGATCACGGAGGCCAAGCTGGCTGAGTGCCAAGACCAGCTGCAGGGCTACGAGAGGAAGAACATCGA
CCTCACAGCCATCATTTCAGACCTGCGCAGCCGGGTAAGGGACTGGCAGAAGGGATCCCACGAACTGGCC
CGAGCAGGGGCCCGCTTACCGAGATGA

Translation (638 aa):
MSASSSGGSPRFPSCGKNGVTSLTQKKVLRTPCGAPSVTVTKSHKRGMKGDTVNVRRSVRVKTKNPPHCL
EITPPSSEKLVSVMRLSDLSTEDDDSGHCKMNRYDKKIDSLMNAVGCLKSEVKMQKGERQMAKRFLEERK
EELEEVAHELAETEHENTVLRHNIERIKEEKDFTMLQKKHLQQEKECLMSKLVEAEMDGAAAAKQVMALK
DTIGKLKTEKQMTCTDINTLTRQKELLLQKLSTFEETNRTLRDLLREQHCKEDSERLMEQQGTLLKRLAE
ADSEKARLLLLLQDKDKEVEELLQEIQCEKAQAKTASELSKSMESMRGHLQAQLRCKEAENSRLCMQIKN
LERSGNQHKAEVEAIMEQLKELKQKGDRDKETLKKAIRAQKERAEKSEEYAEQLHVQLADKDLYVAEALS
TLESWRSRYNQVVKDKGDLELEIIVLNDRVTDLVNQQQSLEEKMREDRDSLVERLHRQTAEYSAFKLENE
RLKASFAPMEDKLNQAHLEVQQLKASVKNYEGMIDNYKSQVMKTRLEADEVAAQLERCDKENKMLKDEMN
KEIEAARRQFQSQLADLQQLPDILKITEAKLAECQDQLQGYERKNIDLTAIISDLRSRVRDWQKGSHELA
RAGARLPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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