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Report for CCDS15879.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15879.1 Public Mus musculus 2 Sh3glb2 23 108 98 CCDS HistoryNCBI Gene:227700Re-query CCDS DB by CCDS ID:15879.1Re-query CCDS DB by GeneID:227700See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15879.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028214.14 ENSMUSP00000028214.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028214.14Link to Ensembl Protein Viewer:ENSMUSP00000028214.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000028214Re-query CCDS DB by Protein ID:ENSMUSP00000028214
Original member Current member NCBI NM_139302.2 NP_647463.1 Accepted alive Link to Nucleotide Sequence:NM_139302.2Link to Protein Sequence:NP_647463.1Re-query CCDS DB by Nucleotide ID:NM_139302Re-query CCDS DB by Protein ID:NP_647463Link to BLAST:NP_647463.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_647463.1 395 Q8R3V5-1 395 100% 0 0

Chromosomal Locations for CCDS 15879.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30345320 30345427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30345699 30345939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30346353 30346453 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30346611 30346700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30347081 30347104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30348555 30348617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30350288 30350380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30350584 30350717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30354853 30354981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30355261 30355402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30359143 30359205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1188 nt):
ATGGACTTCAACATGAAGAAGCTGGCGTCGGACGCGGGCATCTTCTTCACTCGGGCGGTGCAGTTCACAG
AGGAGAAGTTTGGCCAGGCTGAGAAGACGGAGCTTGACGCCCACTTTGAAAACCTCCTAGCTCGGGCAGA
CAGCACCAAGAACTGGACAGAGCGGATCCTGAGGCAGACCGAGGTGCTGCTGCAGCCCAACCCCAGTGCT
CGAGTGGAGGAGTTCCTATATGAGAAGCTGGACAGAAAGGTGCCCTCGAGAGTCACCAATGGGGAGCTGC
TGGCTCAGTACATGGCGGAGGCAGCCAGCGAGCTGGGCCCCAGCACTCCCTACGGGAAGACGCTGATCAA
GGTGTCAGAAGCTGAGAAGCGCCTCGGAGCAGCAGAGCGGGATTTCATTCACACTGCCTCCCTCAGCTTC
CTCACACCCCTGCGGAACTTCCTAGAGGGGGACTGGAAAACGATTTCGAAGGAGAGGCGGCTCCTGCAGA
ACCGGCGTCTTGACCTGGATGCCTGCAAAGCCCGGCTAAAGAAGGCCAAGGCAGCCGAAGCCAAAGCCAC
GACGGTGCCTGACTTTCAGGAGACTAGACCTCGTAATTACATTCTATCGGCCAGCGCCTCCGCGCTTTGG
AACGATGAAGTCGACAAGGCTGAGCAGGAGCTTCGAGTGGCGCAGACAGAGTTTGACCGGCAGGCAGAAG
TGACCCGTCTCCTGCTGGAGGGGATCAGCAGTACTCATGTGAACCACCTTCGCTGCCTCCATGAGTTCGT
CAAGTCTCAGACAACCTACTATGCACAGTGCTACCGCCACATGCTGGATCTGCAGAAACAGCTAGGCAGA
TTTCCAGGCACCTTCGTGGGCACCACAGAGCCTGCCTCCCCACCCCTGAGCAGCACCTCACCTACCACCA
CTGCGGCCACCATGCCTGTGGTACCTACTGGGGCTGTCTTGGCCCCTCCAGAAGAGGCAGCCCTCTGCCT
GGAGGAGGTGGCTCCCCCAGCCAGTGGGACTCGAAAGGCCCGGGTGCTCTACGACTACGAGGCAGCTGAC
AGCAGTGAGCTGGCCCTGCTGGCTGATGAGCTCATCACTGTCTACAGCCTGCCAGGCATGGATCCCGACT
GGCTCATTGGTGAGAGAGGCAACAAGAAGGGCAAGGTTCCTGTCACCTACCTGGAACTTCTCAGCTAA

Translation (395 aa):
MDFNMKKLASDAGIFFTRAVQFTEEKFGQAEKTELDAHFENLLARADSTKNWTERILRQTEVLLQPNPSA
RVEEFLYEKLDRKVPSRVTNGELLAQYMAEAASELGPSTPYGKTLIKVSEAEKRLGAAERDFIHTASLSF
LTPLRNFLEGDWKTISKERRLLQNRRLDLDACKARLKKAKAAEAKATTVPDFQETRPRNYILSASASALW
NDEVDKAEQELRVAQTEFDRQAEVTRLLLEGISSTHVNHLRCLHEFVKSQTTYYAQCYRHMLDLQKQLGR
FPGTFVGTTEPASPPLSSTSPTTTAATMPVVPTGAVLAPPEEAALCLEEVAPPASGTRKARVLYDYEAAD
SSELALLADELITVYSLPGMDPDWLIGERGNKKGKVPVTYLELLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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