NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15890.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15890.1 Public Mus musculus 2 Tor1b 23 108 98 CCDS HistoryNCBI Gene:30934Re-query CCDS DB by CCDS ID:15890.1Re-query CCDS DB by GeneID:30934See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15890.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028199.11 ENSMUSP00000028199.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028199.11Link to Ensembl Protein Viewer:ENSMUSP00000028199.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028199Re-query CCDS DB by Protein ID:ENSMUSP00000028199
Original member Current member NCBI NM_133673.3 NP_598434.2 Accepted alive Link to Nucleotide Sequence:NM_133673.3Link to Protein Sequence:NP_598434.2Re-query CCDS DB by Nucleotide ID:NM_133673Re-query CCDS DB by Protein ID:NP_598434Link to BLAST:NP_598434.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598434.2 336 Q9ER41 336 100% 0 0

Chromosomal Locations for CCDS 15890.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30953025 30953223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30953752 30954017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30955778 30955953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30956448 30956575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30956812 30957053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1011 nt):
ATGAGACGAATCGGAGCGTTTGGGGGCTCCACGGCCCTGTGGGCGCTGCTGGCCGCCCACGTGGCGGGGG
CGTTCGAGCCCGTAAGCGTGGGCATCGCCATCGGGGCCGTGTCGGCGCTCACCGGCTACCTGTCCTATAC
CGATTTCTACTGCCGCTTCACCGAGTGCTGCCATGAGGAACGGCCCCTCAACACGTCGGCCCTCAAGCTG
GACTTGGAAGAGAAGCTGTTTGGACAGCACCTTGCCACCGAAGTGATTCTCAAGGCATTGACTGGCTTCA
GGAACAACAAAAATTCCAAGAAACCATTGACTCTGTCCTTGCACGGCTGGGCTGGCACGGGCAAGAATTT
TATCAGCCAGATTGTGGCTGAAAACCTTTATCCAAAAGGCCTGAAGAGTAACTTTGTCCACCTGTTCGTC
TCTACTTTGCACTTCCCTCATGAGCAGAAGATAAAGGTGTACCAGGACCAGCTCCAGAAGTGGATCCGAG
GCAATGTGAGTGCGTGTGGCAGCTCCGTCTTCATCTTTGACGAGATGGATAAGTTGCATCCTGGGATCAT
TGATGCAATCAAGCCCTTCCTGGACTACTATGAGCAGGTGGATGGGATTTCCTACCGCAGAGCCATCTTC
ATCTTCCTCAGCAATGCAGGAGGAGACCTGATCACTAAGACGGCCCTGGACTTCTGGCGGGCAGGAAGAA
AAAGGGAGGAGATCCAGCTGAAGGACCTGGAGCCTGTGCTGTCTGTGGGCGTCTTCAACAACAAGCACAG
TGGCCTGTGGCACAGTGGGCTAATAGACAAAAACCTCATCGACTATTTTATCCCCTTCCTGCCCTTGGAG
TACAAACACGTGAAGATGTGTGTGCGGGCAGAGATGAGGGCCCGAGGGGCTGCCGTCGATGAGGACGTCG
TCACCAGTGTGGCAGATGAAATGACCTTCTTCCCCAAGGATGAGAAGATCTACTCAGACAAGGGCTGCAA
GACTGTGCAGTCCCGGCTGGATTTCCACTGA

Translation (336 aa):
MRRIGAFGGSTALWALLAAHVAGAFEPVSVGIAIGAVSALTGYLSYTDFYCRFTECCHEERPLNTSALKL
DLEEKLFGQHLATEVILKALTGFRNNKNSKKPLTLSLHGWAGTGKNFISQIVAENLYPKGLKSNFVHLFV
STLHFPHEQKIKVYQDQLQKWIRGNVSACGSSVFIFDEMDKLHPGIIDAIKPFLDYYEQVDGISYRRAIF
IFLSNAGGDLITKTALDFWRAGRKREEIQLKDLEPVLSVGVFNNKHSGLWHSGLIDKNLIDYFIPFLPLE
YKHVKMCVRAEMRARGAAVDEDVVTSVADEMTFFPKDEKIYSDKGCKTVQSRLDFH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH