NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15942.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15942.1 Public Mus musculus 2 Zbtb43 23 108 98 CCDS HistoryNCBI Gene:71834Re-query CCDS DB by CCDS ID:15942.1Re-query CCDS DB by GeneID:71834See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15942.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095035.2 ENSMUSP00000092645.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095035.2Link to Ensembl Protein Viewer:ENSMUSP00000092645.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000095035Re-query CCDS DB by Protein ID:ENSMUSP00000092645
Original member Current member EBI ENSMUST00000113156.1 ENSMUSP00000108781.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113156.1Link to Ensembl Protein Viewer:ENSMUSP00000108781.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000113156Re-query CCDS DB by Protein ID:ENSMUSP00000108781
Original member Current member NCBI NM_001355610.1 NP_001342539.1 Accepted alive Link to Nucleotide Sequence:NM_001355610.1Link to Protein Sequence:NP_001342539.1Re-query CCDS DB by Nucleotide ID:NM_001355610Re-query CCDS DB by Protein ID:NP_001342539Link to BLAST:NP_001342539.1
Original member Current member NCBI NM_027947.2 NP_082223.2 Accepted alive Link to Nucleotide Sequence:NM_027947.2Link to Protein Sequence:NP_082223.2Re-query CCDS DB by Nucleotide ID:NM_027947Re-query CCDS DB by Protein ID:NP_082223Link to BLAST:NP_082223.2

Chromosomal Locations for CCDS 15942.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 33453697 33455123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33462266 33462353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1515 nt):
ATGCGAAAAAACGTTTATTCATCCCAGATAGGGCACCAAGGACAGAGCAAAGTACGATTCCATCATCAAA
GTCCAACTTGTCGAACCACACTAAACAAGATTGGTGATGAAATGGAGCCTGGAACGAACTCTTTTCAAGT
AGAGTTTCCAGATTTTTCCAGCACCATTCTGCAGAAACTAAACCAGCAGCGCCAGCAAGGACAGTTATGT
GACGTCTCCATTGTTGTCCAAGGCCACATTTTCCAGGCGCACAAAGCTGTTCTTGCCGCCAGTTCTCCCT
ACTTTTGTGACCAAGTACTCCTGAAAAACAGTAGGAGAATTGTTTTGCCCGATGTAATGAACCCAAGAGT
GTTTGAGAACATTCTTTTATTTAGCTACACAGGACGCCTTGTCATGCCTGCTCCAGAAATTGTTAGTTAC
TTAACAGCGGCCAGCTTCCTCCAGATGTGGCACGTGGTGGACAAGTGCACCGAGGTTCTGGAGGGAAACC
CCACGGTCCTGTGTCAGAAGCTGAACCACGGCAGTGACCACCAGTCTCCCAGTAGCAGTAACTACAACGG
CCTGGTGGAGAGCTTTGAGCTGGGCTCTGGGGGCCACACTGATTTCCCCAAAGCCCAGGAACTGAGAGAC
GGAGAGAATGAAGAGGAGAGCACCAAAGACGAGCTGTCATCTCAGGTCACCGAGCACGAGTATTTGCCCA
GTAACTCGTCTACTGAGCACGACCGACTGAGCACAGAGATGGCCAGCCAGGACGGGGAGGAGGGGACCAA
TGACAGTACTGAGTTCCACTACACCCGGCCTCTGTATAGCAAGCCCAGCATCATGGCTCATAGGCGCTGG
ATCCACGTGAAGCCTGAGCGCTTGGAACAGGCATGGGATGGCATGGATGTTCACGCAGCCTACGATGAGC
ACCAGGTCACTGAATCCGTCAATACCATGCAGACGGATCACTCTGCCCAGCCTTCGGGAGCAGAGGAGGA
GTTCCAAATTGTGGAAAAGAAAGTGGAAGTAGAGTTTGATGAGCAAGCAGAAGGCAGCAGCTATGATGAA
CAGGTGGACTTCTATGGCTCCTCCATGGAAGAGTTCTCTGGAGAAAAGTTGGGTGGGAATCTAATTGGAC
ACAAACAGGAGGCTGCCCTTGCCGCAGGCTACAGTGAGAATATTGAAATGGCGATGGGGATAAAAGAAGA
GGCGTCCCACTTAGGATTCTCGGCCACCGACAAGCTGTATCCTTGTCAGTGTGGGAAAAGTTTCACGCAC
AAAAGTCAGCGAGATCGACACATGAGCATGCACCTCGGTCTTCGCCCGTATGGCTGTAGTGTCTGTGGTA
AGAAATTCAAAATGAAGCACCATCTCGTGGGCCACATGAAAATTCATACAGGCATAAAGCCCTACGAGTG
TAATATCTGTGCAAAGAGATTTATGTGGAGGGACAGTTTCCACAGGCATGTGACTTCTTGTACCAAGTCC
TATGAAGCTGCAAAGGCTGAGCAGAATACAACTGAGGCTAACTAA

Translation (504 aa):
MRKNVYSSQIGHQGQSKVRFHHQSPTCRTTLNKIGDEMEPGTNSFQVEFPDFSSTILQKLNQQRQQGQLC
DVSIVVQGHIFQAHKAVLAASSPYFCDQVLLKNSRRIVLPDVMNPRVFENILLFSYTGRLVMPAPEIVSY
LTAASFLQMWHVVDKCTEVLEGNPTVLCQKLNHGSDHQSPSSSNYNGLVESFELGSGGHTDFPKAQELRD
GENEEESTKDELSSQVTEHEYLPSNSSTEHDRLSTEMASQDGEEGTNDSTEFHYTRPLYSKPSIMAHRRW
IHVKPERLEQAWDGMDVHAAYDEHQVTESVNTMQTDHSAQPSGAEEEFQIVEKKVEVEFDEQAEGSSYDE
QVDFYGSSMEEFSGEKLGGNLIGHKQEAALAAGYSENIEMAMGIKEEASHLGFSATDKLYPCQCGKSFTH
KSQRDRHMSMHLGLRPYGCSVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTSCTKS
YEAAKAEQNTTEAN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH