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Report for CCDS15951.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15951.1 Public Mus musculus 2 Rabepk 23 108 98 CCDS HistoryNCBI Gene:227746Re-query CCDS DB by CCDS ID:15951.1Re-query CCDS DB by GeneID:227746See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15951.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000145903.7 ENSMUSP00000122360.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000145903.7Link to Ensembl Protein Viewer:ENSMUSP00000122360.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000145903Re-query CCDS DB by Protein ID:ENSMUSP00000122360
Original member Current member NCBI NM_145522.4 NP_663497.2 Accepted alive Link to Nucleotide Sequence:NM_145522.4Link to Protein Sequence:NP_663497.2Re-query CCDS DB by Nucleotide ID:NM_145522Re-query CCDS DB by Protein ID:NP_663497Link to BLAST:NP_663497.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663497.2 380 Q8VCH5 380 100% 0 0

Chromosomal Locations for CCDS 15951.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 34779237 34779529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34780597 34780746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34784546 34784695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34785567 34785728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34790503 34790655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34795172 34795329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34797375 34797433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 34799751 34799768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1143 nt):
ATGCGGGGGCTGCGGCAGGGCATCATGAAGCAGCTGCCCATCTTGGAGCCTGGAGACAAGCCCAGGAAAG
CCACATGGTACACTTTGACTTGCCCTGGAGACAGGCCCTGCCCTCGAGTTGGCCACAGCTGCTCATATTT
CCCCCCAGTTGGTGATGCCGAGAGCGGGAAGATCTTCATTGTCGGGGGAGCAAATCCAAACCAAAGTTTC
TCAGATGTACACACCATGGACTTGGGAACACACCAGTGGGACACGGCCACCAGGGAGGGCCTCTTGCCTC
GGTACGAGCATGCCAGCTTCCTTCCCTCCTGCTCTCCTCACAGCATCTGGGTGTTTGGAGGTGCAGACCA
GTCAGGAAATCGAAACTGTCTGCAAGTCATGAGTCCTGAAGACAGGACGTGGAGCACACCAGAAGTGACT
GGCTCCCCTCCATCCCCAAGAACATTCCACACATCGTCCGCAGCTATCGGAAACCAACTATACGTCTTTG
GGGGAGGAGAGAGAGGTGCCCAGCCTGTGGAGGACGTGAAGTTGCATGTATTTGACGCAAACACTCTGAC
ATGGTCTCAACCGGAGACACATGGAAGTCCTCCGTCTCCTCGGCATGGCCATGTGATGGTGGCAGCGGGC
ACAAAACTCTTCATCCACGGAGGATTGGCAGGGGACAAGTTCTTTGATGATCTCCATTGCATTGATATAG
GTGACATGAGCTGGCAGAAGCTTGGTCCCACCGGGGCTGTTCCAGTCGGCTGTGCTGCCCATGCCGCCGT
TGCTGTGGGACACCATGTATATATGTTTGGAGGTATGACAGCCACTGGAGCACTGAACATGATGTACAAG
TATCACACAGAAAAGCAGCACTGGACTGTACTTCAGTTTGACACTTCCCTACCCGCTGGACGACTGGACC
ACTCCATGTGTGTCATCCCATGGCCAGTGATGTCTACCTCTGAGAATAAAGACTCAGATTCTGTCATTCT
AACCCTCCAAGATGAGAAAGGGGACGCTGCTGAGAAAGCAGAGACCCAGAGTGGAGGACCACACGAGGAG
AGTCCAACTACTGTGTTGCTCTGCTTTGTGTTCGGTGGGATGAACACAGAAGGGGAGGTTTATGACGACT
GTCTCGTAACTGTAGTGGACTAA

Translation (380 aa):
MRGLRQGIMKQLPILEPGDKPRKATWYTLTCPGDRPCPRVGHSCSYFPPVGDAESGKIFIVGGANPNQSF
SDVHTMDLGTHQWDTATREGLLPRYEHASFLPSCSPHSIWVFGGADQSGNRNCLQVMSPEDRTWSTPEVT
GSPPSPRTFHTSSAAIGNQLYVFGGGERGAQPVEDVKLHVFDANTLTWSQPETHGSPPSPRHGHVMVAAG
TKLFIHGGLAGDKFFDDLHCIDIGDMSWQKLGPTGAVPVGCAAHAAVAVGHHVYMFGGMTATGALNMMYK
YHTEKQHWTVLQFDTSLPAGRLDHSMCVIPWPVMSTSENKDSDSVILTLQDEKGDAAEKAETQSGGPHEE
SPTTVLLCFVFGGMNTEGEVYDDCLVTVVD


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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