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Report for CCDS16049.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16049.1 Public Mus musculus 2 Acvr1c 23 108 98 CCDS HistoryNCBI Gene:269275Re-query CCDS DB by CCDS ID:16049.1Re-query CCDS DB by GeneID:269275See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16049.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000100085.7 ENSMUSP00000097663.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000100085.7Link to Ensembl Protein Viewer:ENSMUSP00000097663.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000100085Re-query CCDS DB by Protein ID:ENSMUSP00000097663
Original member Current member NCBI NM_001033369.3 NP_001028541.1 Accepted alive Link to Nucleotide Sequence:NM_001033369.3Link to Protein Sequence:NP_001028541.1Re-query CCDS DB by Nucleotide ID:NM_001033369Re-query CCDS DB by Protein ID:NP_001028541Link to BLAST:NP_001028541.1

Chromosomal Locations for CCDS 16049.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 58274918 58275043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58280239 58280369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58281597 58281721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58283389 58283545 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58284832 58284999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58287681 58287911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 58315793 58315946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1092 nt):
ATGCTAACCAACGGGAAAGAGCAGGTGATCAAATCGTGTGTGTCCCTCCCGGAACTAAATGCTCAGGTCT
TCTGTCACAGTTCCAACAACGTGACCAAAACCGAATGTTGCTTCACAGACTTCTGCAACAATATCACACT
GCACCTTCCCACAGGTCTGCCTCTCTTGGTTCAAAGAACAATCGCAAGGACAATTGTACTTCAAGAAATC
GTAGGAAAAGGTCGGTTTGGGGAAGTGTGGCACGGAAGATGGTGTGGAGAAGATGTGGCTGTGAAAATAT
TCTCCTCCAGGGATGAGAGATCTTGGTTCCGTGAGGCGGAAATTTATCAGACGGTGATGCTGAGACACGA
GAACATCCTCGGTTTCATCGCAGCTGACAACAAAGATAATGGAACTTGGACACAACTCTGGCTTGTGTCA
GAGTATCACGAGCAGGGCTCCTTGTATGACTATTTGAACAGAAACATAGTGACTGTGGCTGGAATGGTCA
AGCTGGCGCTTTCCATAGCGAGTGGTCTGGCTCACCTGCACATGGAGATCGTGGGTACTCAAGGTAAGCC
TGCTATTGCTCACCGAGATATAAAGTCAAAGAATATCCTAGTCAAAAAATGTGACACTTGTGCCATAGCT
GACTTAGGGCTGGCTGTGAAGCACGATTCTATCATGAACACTATAGACATACCCCAGAATCCTAAAGTGG
GAACCAAGAGGTACATGGCTCCCGAAATGCTTGATGATACAATGAACCTGAGCATCTTTGAGTCCTTCAA
GCGAGCTGACATCTATTCGGTGGGGCTGGTTTACTGGGAAATAGCTCGAAGGTGTTCAGTTGGAGGAGTT
GTTGAGGAGTACCAGTTGCCTTACTATGACATGGTGCCTTCAGATCCTTCGATAGAAGAAATGAGGAAGG
TTGTCTGTGATCAGAAACTCCGACCAAATCTCCCAAACCAGTGGCAAAGCTGTGAAGCGCTGCGGGTCAT
GGGAAGAATAATGCGTGAGTGCTGGTACGCCAACGGGGCAGCACGCCTGACAGCCCTGCGCGTGAAGAAG
ACCATCTCCCAGCTGTGTGTCAAGGAAGACTGTAAAGCTTAG

Translation (363 aa):
MLTNGKEQVIKSCVSLPELNAQVFCHSSNNVTKTECCFTDFCNNITLHLPTGLPLLVQRTIARTIVLQEI
VGKGRFGEVWHGRWCGEDVAVKIFSSRDERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVS
EYHEQGSLYDYLNRNIVTVAGMVKLALSIASGLAHLHMEIVGTQGKPAIAHRDIKSKNILVKKCDTCAIA
DLGLAVKHDSIMNTIDIPQNPKVGTKRYMAPEMLDDTMNLSIFESFKRADIYSVGLVYWEIARRCSVGGV
VEEYQLPYYDMVPSDPSIEEMRKVVCDQKLRPNLPNQWQSCEALRVMGRIMRECWYANGAARLTALRVKK
TISQLCVKEDCKA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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