NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16096.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16096.1 Public Mus musculus 2 Fastkd1 23 108 98 CCDS HistoryNCBI Gene:320720Re-query CCDS DB by CCDS ID:16096.1Re-query CCDS DB by GeneID:320720See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16096.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000073152.12 ENSMUSP00000072896.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000073152.12Link to Ensembl Protein Viewer:ENSMUSP00000072896.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000073152Re-query CCDS DB by Protein ID:ENSMUSP00000072896
Original member Current member NCBI NM_177244.3 NP_796218.2 Accepted alive Link to Nucleotide Sequence:NM_177244.3Link to Protein Sequence:NP_796218.2Re-query CCDS DB by Nucleotide ID:NM_177244Re-query CCDS DB by Protein ID:NP_796218Link to BLAST:NP_796218.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_796218.2 829 Q6DI86-1 829 100% 0 0

Chromosomal Locations for CCDS 16096.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 69687045 69687140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69690063 69690177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69691235 69691364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69693869 69693982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69694516 69694647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69696843 69696971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69700124 69700238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69702363 69702849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69704253 69704384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69705422 69705532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69707308 69707706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69708511 69708636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69711494 69711562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 69712127 69712461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2490 nt):
ATGTTCCGGCTACGAAGCATCTCTTTACTCTCTTGGAGAGCATTTCCGCTCCGCCCCTTCAGTTGTGAGT
CATTAATTACTCAGATGCAGAAGTGTACAAACGAAGAACAAGTGTTTGACCTTATTGAGACGAATACGGC
AACGCTCTCCGAACAGCAAGTGGGCTGTGCGTTTAATGTACTTTGGCAGTTTCAGAAGCAGAAGACCGTC
TTGGAAAAAAACGTTGACCATGTTAGAAACCATCCTCAGTTTCTTACTCTTTGCAGCATTACAACAAATC
ACATCCCAGCAATGAGTGATGCTACCCTGGTGGATGTGTTATACAGCATAAAGCAGTTTGCAGTTGAATC
CCATCACCCACTAATCGAAGCACTGGTTACAGAAGCATGGAAAAGACTGGAAAGGTTCGATACTAATGTG
CTGTCCATATTTTCCACTTGCTTGGCCGATCAGCATCTGTATTTCAGTCCATTAATGGGAAAAATAGCTG
ATATTGTAAATAGGAGACTGGAAACCATCCAGGACTTAAGGGCCTTATCTGTCTTAATGGTCAGCATTTC
TTCATTAATATCACCGTGTTTCCAGGAACGACTGGTGATCAGAACAGAACTTCTTTTTGACACTGTAAAT
TCTTCCAAAGTCAACATTGCAAGAAGGATATTACTGTTTCTTCGAAATGTCAAATACAGTCATTACCCAC
TGTTAGAGAGGTGTAATCAAGTGTTTATAAGGAACATGAGCCATCTTGATCTGGAGTCCATCAGTAAAAT
CCTTAACCTGTATCAGTTTCTACAGTTCCACAGCTTTGAATTTGTTGAAGCAGCTCGAGGGAGGCTGGCT
GAGATGACCCTCCCTTCTGATCATCCTGAAAGCTTTGTCCGGTTGTTTGCCGCTCTGGGGCCGGTGGCCA
GACCTGAGATAAAGAAACAGCTTAAATCAACTATACTACTGCTGTCAGAGGAGCTGAGCAGCCAGCAAGC
GCTGATCGTGTTGGGAGCAATGGAAGATATGGAAAGCAGAAATTCACACTTGCTTAAAAAGATTGTTTCT
GTTCTGTACAAACATTTGGATAACTATAAATCGATAGAGCTATTGAAGATAATACAAGCATTGACTTTTC
TACATTTTCAAAGTAAGGAGCTTTTTATGAAACTCAGAGAATTACTTCTCAGTCGTTTGGAAGCTAGTGT
CATACCCAGTGAGATTTCTGTTCTGGTCTCTGCTCTGTCCATGCTTCCACATCCGCACCTCAGTGAAACA
GCGGTCTCCCGGATTGAAGCAGTTCTACCACAGTGTGACTTCAGGGAACTGAATGACTTGGTAGTATATC
TCATGCGCTGGATTCAGAGTGATCTCGTCTGCCTGGCTAGTACTACTGGAAAGCAACTGGACCTCCTTCA
AAAACTAGATCAACTGGGCCGTCACCGGCTGCAACAGAGCACCAACTTGGATCTTCTGTGGGAGGAGCTC
AAGTCTTTGAAGGGAGAATGGCTTCACGAATCCTTAGTTGAAGAATCCATCGCTGCTTTACTGCGTTTCA
TGGATGAAATAGATTACAGCAATATTGCCAAGGTCGCGTCTTTTCTTTCCAGAACTAACTACCTCAACAC
TCTGCTGCTGGATAGGATCGCTTCAGTGGCCATTCAGCAGGTTGAAAAGATCCATCCCTTTTCAGTCCTT
GCTATTATTCTCCCATTCAGCATTCTGAACTATGATCCACCTCAAAAGGATGAATTCTTTGGAGCGTGTG
TCCAATGCTGTAATTCTTACTTAGGTACATTGGATCCTGGTACATTAGTGTTTCTTGGTTTTTCTTTGGC
CGTACTTGAATATTTTCCAGAAGATCTGCTAAAGAAAATGTTTAACATCGAGTTCCTTGCCAGATTAGAT
TCCCAGCTTGAAATTTTACCTTCAAGTCTGAGTGCAAGGATCCAGTTCCGCCTCATGGAGTTAAATAGAG
CAGTCTGCTTGGAGTGCCCCGAGCTGCAGGTTCCATGGTTTCATGACCGCTTTTGTCAGCGACAGTTTAA
CAAAGACACTGGTGTTATGAACGGAGCCCAACAACAGATCTATAAAATGTTAGCAGAGGTCCTGGGAGGA
CACCAATGTGTGAAGCCTTCCGCTCTTTCACCGTATTACCACACAGTGGGTTTTGAATGCATTTTGGATA
AACGAAAAAAACCTCTGCCTTATGAAAGCCATAGCATAGCTCCCAGAAAATCCCTGGGCATGCACTGGGA
TTCAAGAGTTGAGCCAAGGCTTCCACCAGAAGCTGAGAGGATTGCTATAGAACTTTTGGATGTAAGAGCC
TTTTGTTCAAACATTCCTCACTTAAAAGGAAAATCTGCTATGAAAAAGCGGCATTTGGAAATCTTGGGCT
ACCGTGTTATTCAGATCCCTTACTTTGAGTGGAACTCTATGGCAATGTCAACGAAGGATGCACGGATGGA
CTACCTGAGAGAACATCTATTTGGGGAAGGCAAATCATGA

Translation (829 aa):
MFRLRSISLLSWRAFPLRPFSCESLITQMQKCTNEEQVFDLIETNTATLSEQQVGCAFNVLWQFQKQKTV
LEKNVDHVRNHPQFLTLCSITTNHIPAMSDATLVDVLYSIKQFAVESHHPLIEALVTEAWKRLERFDTNV
LSIFSTCLADQHLYFSPLMGKIADIVNRRLETIQDLRALSVLMVSISSLISPCFQERLVIRTELLFDTVN
SSKVNIARRILLFLRNVKYSHYPLLERCNQVFIRNMSHLDLESISKILNLYQFLQFHSFEFVEAARGRLA
EMTLPSDHPESFVRLFAALGPVARPEIKKQLKSTILLLSEELSSQQALIVLGAMEDMESRNSHLLKKIVS
VLYKHLDNYKSIELLKIIQALTFLHFQSKELFMKLRELLLSRLEASVIPSEISVLVSALSMLPHPHLSET
AVSRIEAVLPQCDFRELNDLVVYLMRWIQSDLVCLASTTGKQLDLLQKLDQLGRHRLQQSTNLDLLWEEL
KSLKGEWLHESLVEESIAALLRFMDEIDYSNIAKVASFLSRTNYLNTLLLDRIASVAIQQVEKIHPFSVL
AIILPFSILNYDPPQKDEFFGACVQCCNSYLGTLDPGTLVFLGFSLAVLEYFPEDLLKKMFNIEFLARLD
SQLEILPSSLSARIQFRLMELNRAVCLECPELQVPWFHDRFCQRQFNKDTGVMNGAQQQIYKMLAEVLGG
HQCVKPSALSPYYHTVGFECILDKRKKPLPYESHSIAPRKSLGMHWDSRVEPRLPPEAERIAIELLDVRA
FCSNIPHLKGKSAMKKRHLEILGYRVIQIPYFEWNSMAMSTKDARMDYLREHLFGEGKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH