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Report for CCDS16139.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16139.1 Public Mus musculus 2 Hoxd13 23 108 98 CCDS HistoryNCBI Gene:15433Re-query CCDS DB by CCDS ID:16139.1Re-query CCDS DB by GeneID:15433See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16139.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000001872.4 ENSMUSP00000001872.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000001872.4Link to Ensembl Protein Viewer:ENSMUSP00000001872.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000001872Re-query CCDS DB by Protein ID:ENSMUSP00000001872
Original member Current member NCBI NM_008275.4 NP_032301.2 Accepted alive Link to Nucleotide Sequence:NM_008275.4Link to Protein Sequence:NP_032301.2Re-query CCDS DB by Nucleotide ID:NM_008275Re-query CCDS DB by Protein ID:NP_032301Link to BLAST:NP_032301.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032301.2 339 P70217 339 100% 0 0

Chromosomal Locations for CCDS 16139.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74668310 74669078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74669886 74670136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1020 nt):
ATGAGCCGCTCGGGGACTTGGGACATGGATGGGCTGCGGGCGGACGGCGGGGCCGCTGGGGCGGCACCGG
CCTCCTCCTCCTCCTCCGTAGCAGCGCCTGGCCAGTGTCGCGGCTTCCTGTCGGCGCCGGTGTTCGCGGG
GACACATTCCGGACGCGCGGCGGCGGCGGCCGCAGCAGCGGCGGCGGCAGCGGCGGCAGCATCCAGCTTC
GCTTACCCAGGGACCTCTGAGCGCACAGGCTCTTCGTCGTCGTCGTCATCCTCGGCTGTGATCGCCACTC
GCCCCGAGGCTCCTGTGGCCAAAGAGTGTCCCGCGCCAGCGGCCGCCGCGACCGCTGCAGCACCGCCGGG
CGCTCCCGCGCTGGGCTATGGCTACCACTTCGGCAACGGTTACTACAGCTGCCGCATGTCGCACGGCGTA
GGCTTACAGCAGAACGCTCTCAAGTCGTCCCCGCACGCTTCTCTCGGAGGTTTCCCGGTGGAGAAGTACA
TGGACGTGTCGGGCCTGGCGAGCAGCAGCGTACCGACCAACGAGGTGCCCGCAAGAGCCAAGGAAGTGTC
CTTCTACCAGGGCTACACAAGTCCCTATCAGCACGTGCCTGGCTACATCGACATGGTGTCCACTTTTGGA
TCCGGGGAACCTCGGCACGAGGCATACATCTCCATGGAGGGCTACCAGTCCTGGACGCTAGCCAACGGGT
GGAACAGCCAGGTGTACTGTGCCAAGGATCAGCCACAGGGGTCCCATTTTTGGAAATCATCCTTTCCAGG
AGATGTGGCTTTAAACCAGCCGGACATGTGCGTCTACCGACGGGGAAGGAAGAAAAGGGTGCCTTACACC
AAACTGCAGCTCAAAGAACTGGAGAATGAGTATGCCATTAACAAGTTCATTAACAAGGACAAGCGGCGGC
GGATCTCAGCTGCCACGAACCTTTCGGAGAGACAAGTAACCATTTGGTTTCAGAATCGAAGGGTGAAGGA
CAAGAAAATCGTCTCCAAGCTCAAAGACACTGTCTCCTGA

Translation (339 aa):
MSRSGTWDMDGLRADGGAAGAAPASSSSSVAAPGQCRGFLSAPVFAGTHSGRAAAAAAAAAAAAAAASSF
AYPGTSERTGSSSSSSSSAVIATRPEAPVAKECPAPAAAATAAAPPGAPALGYGYHFGNGYYSCRMSHGV
GLQQNALKSSPHASLGGFPVEKYMDVSGLASSSVPTNEVPARAKEVSFYQGYTSPYQHVPGYIDMVSTFG
SGEPRHEAYISMEGYQSWTLANGWNSQVYCAKDQPQGSHFWKSSFPGDVALNQPDMCVYRRGRKKRVPYT
KLQLKELENEYAINKFINKDKRRRISAATNLSERQVTIWFQNRRVKDKKIVSKLKDTVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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