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Report for CCDS16171.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16171.1 Public Mus musculus 2 Ppp1r1c 23 108 98 CCDS HistoryNCBI Gene:75276Re-query CCDS DB by CCDS ID:16171.1Re-query CCDS DB by GeneID:75276See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16171.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090760.8 ENSMUSP00000088265.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090760.8Link to Ensembl Protein Viewer:ENSMUSP00000088265.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000090760Re-query CCDS DB by Protein ID:ENSMUSP00000088265
Original member Current member NCBI NM_172420.4 NP_766008.2 Accepted alive Link to Nucleotide Sequence:NM_172420.4Link to Protein Sequence:NP_766008.2Re-query CCDS DB by Nucleotide ID:NM_172420Re-query CCDS DB by Protein ID:NP_766008Link to BLAST:NP_766008.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_766008.2 108 Q8BKK4-1 108 100% 0 0

Chromosomal Locations for CCDS 16171.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 79708174 79708254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79709899 79709959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79756454 79756488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79759611 79759671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79808302 79808390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (327 nt):
ATGGAGCCCAATAGCCCCAAAAAGATACAATTTGCTGTGCCTTTATTCCAGAGTCAGATTGCCCCAGAGG
CAGCAGAGCAGATCAGGAAAAGAAGACCTACACCAGCATCCCTTGTGATTCTCAATGAACATAATTCCCC
AGAAATTGATGAGAAGAGAGTGACTAACACACAAGAATCGCAGAATGCATCGCCTAAGCAAAGGAAGCAG
AGTGTGTACACACCACCGGCCATGAAAGGCGTTAAGCATCTGAAAGACCAGAATGGATCAGCGTTCCCGG
AAGAAGAAGAAAGTGCAAGTGAAAGAGAAGAGAAGTGGAACCATTAA

Translation (108 aa):
MEPNSPKKIQFAVPLFQSQIAPEAAEQIRKRRPTPASLVILNEHNSPEIDEKRVTNTQESQNASPKQRKQ
SVYTPPAMKGVKHLKDQNGSAFPEEEESASEREEKWNH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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