NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16195.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16195.1 Public Mus musculus 2 Smtnl1 23 108 98 CCDS HistoryNCBI Gene:68678Re-query CCDS DB by CCDS ID:16195.1Re-query CCDS DB by GeneID:68678See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16195.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028471.5 ENSMUSP00000028471.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028471.5Link to Ensembl Protein Viewer:ENSMUSP00000028471.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028471Re-query CCDS DB by Protein ID:ENSMUSP00000028471
Original member Current member NCBI NM_024230.2 NP_077192.1 Accepted alive Link to Nucleotide Sequence:NM_024230.2Link to Protein Sequence:NP_077192.1Re-query CCDS DB by Nucleotide ID:NM_024230Re-query CCDS DB by Protein ID:NP_077192Link to BLAST:NP_077192.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_077192.1 459 Q99LM3 459 100% 0 0

Chromosomal Locations for CCDS 16195.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 84811395 84811539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84815291 84815442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84815607 84815721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84815884 84816039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84816978 84817023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84817124 84817256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 84818276 84818908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1380 nt):
ATGGAGCAGACAGAAGGGAACTCCTCTGAGGATGGGACCACTGTCTCCCCAACTGCAGGGAATCTTGAGA
CACCAGGAAGTCAAGGCATTGCAGAGGAGGTGGCCGAAGGCACAGTTGGGACAAGTGACAAAGAAGGGCC
TTCAGATTGGGCAGAACATTTGTGTAAAGCAGCATCTAAGAGTGGCGAATCAGGGGGGTCCCCAGGGGAA
GCAAGTATATTAGATGAGCTCAAGACAGACTTGCAAGGGGAAGCCAGAGGGAAGGACGAAGCCCAGGGTG
ACCTTGCTGAGGAGAAGGTTGGGAAGGAAGACACCACAGCGGCTTCTCAGGAAGACACTGGTAAGAAAGA
AGAAACAAAACCTGAACCCAATGAAGTTAGGGAGAAAGAGGAGGCCATGCTGGCCTCGGAGAAGCAGAAG
GTTGATGAGAAAGAGACCAATCTAGAATCTAAGGAGAAATCGGATGTGAATGACAAAGCCAAGCCTGAAC
CCAAGGAGGATGCTGGAGCAGAGGTTACTGTCAACGAGGCTGAGACTGAGTCTCAGGAGGAGGCTGATGT
GAAGGACCAGGCCAAGCCCGAGCTTCCAGAAGTTGATGGGAAAGAGACCGGAAGTGACACAAAGGAGTTG
GTGGAGCCAGAGAGTCCCACTGAAGAGCAAGAGCAGGGTAAGGAAAATGAATCAGAAGAAAGGGCTGCAG
TGATTCCCAGCTCCCCCGAGGAGTGGCCCGAAAGCCCCACAGATGAGGGGCCCAGCCTCAGCCCAGATGG
ATTGGCTCCAGAGTCTACAGGAGAGACCAGTCCTTCAGCCAGTGAATCTTCGCCCAGTGAGGTGCCAGGG
AGTCCCACAGAGCCTCAACCCTCAGAGAAAAAGAAGGATCGAGCACCAGAACGCAGAGTGTCGGCACCCA
GCCGGCCCCGGGGGCCCCGTGCACAGAATCGGAAGGCCATCATGGACAAATTTGGCGGGGCAGCCTCTGG
CCCCACTGCACTGTTCCGGAACACAAAGGCAGCCGGGGCAGCCATCGGTGGTGTCAAGAACATGCTTTTG
GAGTGGTGCCGGGCCATGACGAGAAACTACGAGCACGTGGATATCCAAAACTTCTCCTCCAGCTGGAGCA
GCGGCATGGCCTTCTGTGCCCTCATCCACAAGTTTTTTCCAGAAGCCTTTGACTATGCAGAGCTGGACCC
AGCAAAGCGCCGGCACAACTTCACCCTAGCTTTCTCGACTGCAGAGAAACTAGCCGACTGTGCCCAGCTG
CTGGAGGTGGATGACATGGTGCGGCTGGCAGTGCCCGATTCCAAGTGTGTCTACACCTACATCCAGGAGC
TATACCGTAGCCTTGTGCAGAAAGGGCTGGTGAAGACGAAAAAGAAATGA

Translation (459 aa):
MEQTEGNSSEDGTTVSPTAGNLETPGSQGIAEEVAEGTVGTSDKEGPSDWAEHLCKAASKSGESGGSPGE
ASILDELKTDLQGEARGKDEAQGDLAEEKVGKEDTTAASQEDTGKKEETKPEPNEVREKEEAMLASEKQK
VDEKETNLESKEKSDVNDKAKPEPKEDAGAEVTVNEAETESQEEADVKDQAKPELPEVDGKETGSDTKEL
VEPESPTEEQEQGKENESEERAAVIPSSPEEWPESPTDEGPSLSPDGLAPESTGETSPSASESSPSEVPG
SPTEPQPSEKKKDRAPERRVSAPSRPRGPRAQNRKAIMDKFGGAASGPTALFRNTKAAGAAIGGVKNMLL
EWCRAMTRNYEHVDIQNFSSSWSSGMAFCALIHKFFPEAFDYAELDPAKRRHNFTLAFSTAEKLADCAQL
LEVDDMVRLAVPDSKCVYTYIQELYRSLVQKGLVKTKKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH