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Report for CCDS16283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16283.1 Public Mus musculus 2 Or5as1 23 108 98 CCDS HistoryNCBI Gene:258586Re-query CCDS DB by CCDS ID:16283.1Re-query CCDS DB by GeneID:258586See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16283.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099860.4 ENSMUSP00000097446.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099860.4Link to Ensembl Protein Viewer:ENSMUSP00000097446.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099860Re-query CCDS DB by Protein ID:ENSMUSP00000097446
Original member Current member EBI ENSMUST00000214492.2 ENSMUSP00000149747.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214492.2Link to Ensembl Protein Viewer:ENSMUSP00000149747.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214492Re-query CCDS DB by Protein ID:ENSMUSP00000149747
Original member Current member EBI ENSMUST00000216378.1 ENSMUSP00000150760.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000216378.1Link to Ensembl Protein Viewer:ENSMUSP00000150760.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000216378Re-query CCDS DB by Protein ID:ENSMUSP00000150760
Original member Current member NCBI NM_146593.2 NP_666804.2 Accepted alive Link to Nucleotide Sequence:NM_146593.2Link to Protein Sequence:NP_666804.2Re-query CCDS DB by Nucleotide ID:NM_146593Re-query CCDS DB by Protein ID:NP_666804Link to BLAST:NP_666804.2

Chromosomal Locations for CCDS 16283.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87149721 87150659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGCAGTATACAAACTATACCAAGCCAACAGAGTTTATATTTATCGGATTTACAGATTACCAGCCATTAA
GACTCATGCTATTTTTGGTGTTTTTCATAGTTTACACCTTAACTTTGGTGGGAAATATTGGCTTAATAAT
CCTAGTTAATATTGACTTAAGCCTTCAAACTCCCATGTATCACTTTCTTAGCAATCTGTCTTTCTTAGAT
ATCAGCTATTCTACAGCCATTGCACCTAAAATGCTGGTAGACTTCTTAGCCTCCAAGAAGAGCATCTCAT
TCTGTGGATGTGCTATACAGATGTTTTTCTTTGCATGCTTTGCAGATGCTGAGTGCCTTATCCTGGCTGC
AATGGCATACGACCGCTATGCAGCCATTTGCAACCCACTGCTTTACTCTACATTGGTGTCTCGAAGGGTC
TGCTTCAGCTTTGTTGTGTTGGCTTATTTTAGCGGAAGCGTGACCTCACTGGTGCATGTATCCCTTGCAT
TTATGCTTCCATACTGTAGGTCCAATATTGTCAACCACTTTTTTTGTGATATCCCACCTCTCCTTGCTTT
ATCATGTGCAGATACTCATATTAATGAGCTTCTGCTCTTTGCTTTATGTGGTACAATCCAGACCAGCACT
TTCATGGTCATCCTTATTTCTTACTCTTGCATCCTCATTACTGTTTTGAGCATCAAGTCCACAGGAGGCA
GGAGCAAAACATTTTCCACTTGTGCTTCTCATCTCATAGCAGTCACCTTGTTCTATGGAACACTGCTGTT
TATGTACTTGCGTCCCACCACTAGCTATTCCCCAGACACTGATAAGGTAGTTGCTTTGTTTTACACTGTT
GTATTTCCTATGTTGAATCCAATAATTTACAGCTTCAGAAATAAGGATGTGAAAAATGCATTAAAAAAAT
TGTTTGATAGACTGGGGATCTTCAGATGA

Translation (312 aa):
MQYTNYTKPTEFIFIGFTDYQPLRLMLFLVFFIVYTLTLVGNIGLIILVNIDLSLQTPMYHFLSNLSFLD
ISYSTAIAPKMLVDFLASKKSISFCGCAIQMFFFACFADAECLILAAMAYDRYAAICNPLLYSTLVSRRV
CFSFVVLAYFSGSVTSLVHVSLAFMLPYCRSNIVNHFFCDIPPLLALSCADTHINELLLFALCGTIQTST
FMVILISYSCILITVLSIKSTGGRSKTFSTCASHLIAVTLFYGTLLFMYLRPTTSYSPDTDKVVALFYTV
VFPMLNPIIYSFRNKDVKNALKKLFDRLGIFR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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