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Report for CCDS16326.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16326.1 Public Mus musculus 2 Or5d38 23 108 98 CCDS HistoryNCBI Gene:258644Re-query CCDS DB by CCDS ID:16326.1Re-query CCDS DB by GeneID:258644See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16326.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099833.5 ENSMUSP00000097421.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099833.5Link to Ensembl Protein Viewer:ENSMUSP00000097421.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000099833Re-query CCDS DB by Protein ID:ENSMUSP00000097421
Original member Current member EBI ENSMUST00000217575.2 ENSMUSP00000149099.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217575.2Link to Ensembl Protein Viewer:ENSMUSP00000149099.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217575Re-query CCDS DB by Protein ID:ENSMUSP00000149099
Original member Current member NCBI NM_146650.2 NP_666861.2 Accepted alive Link to Nucleotide Sequence:NM_146650.2Link to Protein Sequence:NP_666861.2Re-query CCDS DB by Nucleotide ID:NM_146650Re-query CCDS DB by Protein ID:NP_666861Link to BLAST:NP_666861.2

Chromosomal Locations for CCDS 16326.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88124033 88124983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGCTTATGAAGTGATGAACCAGACTTCTGCGACCACATTCATCTTGGTTGGTTTCTCAGAATATCCAC
AGCTCCAAAAACCCCTCTTCCTCCTGTTCTTGGCCATCTACTCAGTAACATTGGTGGGGAACCTGGGCAT
ACTTGTGGTTATAAAGGTCAATCCCAAACTTCACACACCCATGTACTTTTTTCTTAGCCACCTATCATTT
TTAGATATATGCTATTCTAGTGTATTTACACCCAAACTTTTGCAGATCTTGATCATGGAAGATAGGACTG
TATCTTTCAAAGCATGCATGGTACAATTTTTCTTTATTTGTACATTCGTGATTACAGAAATGTTCATGTT
AGCAGTGATGGCCTATGACAGGTTTGTGGCTGTTTGTAATCCCCTACTCTACACAGTTGTGATGCCTTTT
CAATTCTGTGCTCTGCTAGTAGCTGGGACATATATGATTGGTGGACTATGTACTGTGATACTTCTATATA
CCCTTTTGCAACTCTCCTATTGTGAATATGGCATCATCAATCACTTTGGCTGTGAGTACTCCGCTGTCAT
CTCTGTGTCTTGCTCTGACTCCTCCTTTAGCCAGTTGACATCCTTAGTCATTGCTATAGTTAGTGAATCT
TCTAGTGTCCTGATCACTCTAGCATCATATGTGTTCATAGTTGTCACTATTATAAAGATGCCTTCCAAAG
GAGGACTGAGAAAAGCCTTCTCCACCTGTACTTCCCACCTGACTGCCATATCAATCTTCCATGGGATCAT
ACTCCTCCTGTACTGTGTTCCCAACTCAAACAGCTCACGGCTCTTTGTCAAAGTGGCCACTGCTCTTTAT
ACAATCATGATCCCTATGTTGAACCCCCTTATCTATAGCCTTAGAAATAAAGATGTGAAGGACACAGTCA
GGAGACTTATCAGCTCAAAACTGCACTCTCACTTGACATAA

Translation (316 aa):
MAYEVMNQTSATTFILVGFSEYPQLQKPLFLLFLAIYSVTLVGNLGILVVIKVNPKLHTPMYFFLSHLSF
LDICYSSVFTPKLLQILIMEDRTVSFKACMVQFFFICTFVITEMFMLAVMAYDRFVAVCNPLLYTVVMPF
QFCALLVAGTYMIGGLCTVILLYTLLQLSYCEYGIINHFGCEYSAVISVSCSDSSFSQLTSLVIAIVSES
SSVLITLASYVFIVVTIIKMPSKGGLRKAFSTCTSHLTAISIFHGIILLLYCVPNSNSSRLFVKVATALY
TIMIPMLNPLIYSLRNKDVKDTVRRLISSKLHSHLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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