NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS16329.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16329.1 Public Mus musculus 2 Or5d41 23 108 98 CCDS HistoryNCBI Gene:258525Re-query CCDS DB by CCDS ID:16329.1Re-query CCDS DB by GeneID:258525See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16329.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099831.1 ENSMUSP00000097419.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099831.1Link to Ensembl Protein Viewer:ENSMUSP00000097419.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099831Re-query CCDS DB by Protein ID:ENSMUSP00000097419
Original member Current member EBI ENSMUST00000214386.1 ENSMUSP00000150142.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214386.1Link to Ensembl Protein Viewer:ENSMUSP00000150142.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214386Re-query CCDS DB by Protein ID:ENSMUSP00000150142
Original member Current member NCBI NM_146532.1 NP_666743.1 Accepted alive Link to Nucleotide Sequence:NM_146532.1Link to Protein Sequence:NP_666743.1Re-query CCDS DB by Nucleotide ID:NM_146532Re-query CCDS DB by Protein ID:NP_666743Link to BLAST:NP_666743.1

Chromosomal Locations for CCDS 16329.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88224080 88225030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (951 nt):
ATGGCTTATGAAGTGATGAACCAGACTTCTGCGACCACATTCATCTTGGTTGGTTTCTCAGAATATCCAC
AGCTCCAAATACCCCTCTTCCTCCTGTTCTTGACCATCTACTCAGTAACATTGATGGGGAACCTGGGCAT
ACTTGTGGTTATAAAGGGTAATCCCAAACTTCACACTCCAATGTACTTTTTTCTTAGCCACCTATCATTT
TTGGATATATGTTATTCTAGTGTATTTACACCCAAACTTTTGCAGATCTTGATCATGGAAGATAGGACGA
TTTCTTTTATTGGATGCATGATACAATTTTTCTTTATTTGTACATTCGTGATTACAGAAATGTTCATGTT
AGCAGTGATGGCCTATGACAGGTTTGTGGCTGTTTGTAATCCCCTACTCTACACAGTTGTGATGCCTTTT
CAATTCTGTGCTCTGCTAGTAGCTGGGACATACATGATTGGTGGACTGTGTGCTGTAATACTTATATATA
CTCTTTTGCAACTCTCCTATTGTGAATATGGCATCATCAATCACTTTGGCTGTGAGTATTCTGCTGTCAT
CTCTGTGTCTTGCTCTGATTCCTCCTTTAGTCAGTTGGCATGCTTAGTCATTTCTATATTTAGTGAATCT
TCTAGTGTCCTGATCACTTTAGCCTCATATGTGTTCATAGTTGTCACTATTATAAAGATGCCTTCCAAAG
GAGGACTGAGAAAAGCCTTCTCCACCTGTACTTCCCACCTGACTGCCATATCAATCTTCCATGGGATCAT
ACTCCTCCTGTACTGTGTTCCCAACTCAAACAGCTCACGGCTCTTTGTCAAAGTGGCCACTGCTCTTTAC
ACAGTCATGATCCCCATGTTGAACCCCCTTATCTATAGCCTTAGAAATAAAGATGTGAAGGACACAGTCA
GGAGACTTATCAGCTCAAAACTGCACTCTCACTTGACATAA

Translation (316 aa):
MAYEVMNQTSATTFILVGFSEYPQLQIPLFLLFLTIYSVTLMGNLGILVVIKGNPKLHTPMYFFLSHLSF
LDICYSSVFTPKLLQILIMEDRTISFIGCMIQFFFICTFVITEMFMLAVMAYDRFVAVCNPLLYTVVMPF
QFCALLVAGTYMIGGLCAVILIYTLLQLSYCEYGIINHFGCEYSAVISVSCSDSSFSQLACLVISIFSES
SSVLITLASYVFIVVTIIKMPSKGGLRKAFSTCTSHLTAISIFHGIILLLYCVPNSNSSRLFVKVATALY
TVMIPMLNPLIYSLRNKDVKDTVRRLISSKLHSHLT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH