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Report for CCDS16337.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16337.1 Public Mus musculus 2 Or4c31 23 108 98 CCDS HistoryNCBI Gene:258522Re-query CCDS DB by CCDS ID:16337.1Re-query CCDS DB by GeneID:258522See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16337.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102618.1 ENSMUSP00000099678.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102618.1Link to Ensembl Protein Viewer:ENSMUSP00000099678.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000102618Re-query CCDS DB by Protein ID:ENSMUSP00000099678
Original member Current member EBI ENSMUST00000219871.1 ENSMUSP00000151738.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000219871.1Link to Ensembl Protein Viewer:ENSMUSP00000151738.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000219871Re-query CCDS DB by Protein ID:ENSMUSP00000151738
Original member Current member NCBI NM_146529.2 NP_666740.1 Accepted alive Link to Nucleotide Sequence:NM_146529.2Link to Protein Sequence:NP_666740.1Re-query CCDS DB by Nucleotide ID:NM_146529Re-query CCDS DB by Protein ID:NP_666740Link to BLAST:NP_666740.1

Chromosomal Locations for CCDS 16337.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88461342 88462253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (912 nt):
ATGCATAACTATAGTGTTACTGAGTTTATTCTTTTTGGATTGACACAGGATCCAGAAAAACAGAAGGCAA
TATTTGGAGTCTTCTTGATTCTTTACCTTATGACTTTAATAGGGAACTTCCTCATCGTGATGACCATTAA
GATGAGTCAGACACTTGGGAGTCCCATGTACTTTTTCCTCTTCTATTTGTCTTTCGCTGATGCTTGCTTC
TCTACAACTACAGCACCTAGATTGATCATAGACGCCCTCTCGCAGAAAAAAATTATTACTTATAATGAAT
GTATGACTCAGGTCTTTGCAGCTCACTTCTTTGGGTGCATGGAGATCTTCGTGCTTATCCTCATGGCCAT
TGACCGCTATGTAGCAATTTGTAAGCCTCTCAGATATACAACTATAATGAGCCAACGTATTTGTGGCATA
TTAGTGATTCTTGCCTGGGTAGGGTCTTGTATTCACTCTTCAGCACAGATTTTCTTAGCCTTAAGATTAC
CATTCTGTGGCCCAAATGTGATTGATCATTATTTCTGCGATTTGCAGCCCTTATTGAAACTTGCCTGCAT
GGATACCTATGTGATAAACTTGCTAGTTGTGTCTAATAGTGGTGCCATATGTATGGTAAGTTTCACACTA
CTGCTTATCTCCTATATTTTCATCTTATACTCTCTGAGAAATCACAGTGTAGAAGGAAGACGAAAGGCCT
TGTCTACATGCACTTCTCATTTCATTGTGGTGGTCATATTTTTTGGCCCCTGTATATTTATATACACACG
CCCACCAACCACCTTCCCAATAGACAAGATGGTGTCTGTGTTTTATACAATTGGAACACCTTTGCTCAAC
CCTCTTATCTATACTCTGAGGAATGCAGAAGTAAAAATTGCCATGAAAAAATTGTGGTGTGGTAAAGTAT
GA

Translation (303 aa):
MHNYSVTEFILFGLTQDPEKQKAIFGVFLILYLMTLIGNFLIVMTIKMSQTLGSPMYFFLFYLSFADACF
STTTAPRLIIDALSQKKIITYNECMTQVFAAHFFGCMEIFVLILMAIDRYVAICKPLRYTTIMSQRICGI
LVILAWVGSCIHSSAQIFLALRLPFCGPNVIDHYFCDLQPLLKLACMDTYVINLLVVSNSGAICMVSFTL
LLISYIFILYSLRNHSVEGRRKALSTCTSHFIVVVIFFGPCIFIYTRPPTTFPIDKMVSVFYTIGTPLLN
PLIYTLRNAEVKIAMKKLWCGKV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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