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Report for CCDS16341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16341.1 Public Mus musculus 2 Or4c102 23 108 98 CCDS HistoryNCBI Gene:258768Re-query CCDS DB by CCDS ID:16341.1Re-query CCDS DB by GeneID:258768See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000090700.1 ENSMUSP00000088201.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090700.1Link to Ensembl Protein Viewer:ENSMUSP00000088201.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000090700Re-query CCDS DB by Protein ID:ENSMUSP00000088201
Original member Current member EBI ENSMUST00000213679.1 ENSMUSP00000149696.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213679.1Link to Ensembl Protein Viewer:ENSMUSP00000149696.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213679Re-query CCDS DB by Protein ID:ENSMUSP00000149696
Original member Current member NCBI NM_146772.2 NP_666983.2 Accepted alive Link to Nucleotide Sequence:NM_146772.2Link to Protein Sequence:NP_666983.2Re-query CCDS DB by Nucleotide ID:NM_146772Re-query CCDS DB by Protein ID:NP_666983Link to BLAST:NP_666983.2

Chromosomal Locations for CCDS 16341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88591806 88592726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (921 nt):
ATGATGAATAAAAACAATGTGACAGAGTTTATTCTGTTGGGAGTTACAAGGGACCCAGAGCTGAGGAAAA
TATTGTCTGTTTTGTTTCTTATTATGTATATGGCCACAGTCTTTGGAAATCTACTCATTGTGGTTACCAT
AACCAGAAGCCCTAGTCTGAGGTCACCCATGTACTTCTTCCTTTTATCTTTGTCACTCATGGATGTCACT
TACTCTTCTGTCATTGCTCCAAAATTGATTATGGACTCCCTTTCTGAGAGGACTATTGTCTCATTTGAAA
GATGTATGACCCAGCTATTTGCAGAACATTTCTTTGGTGGGGTGGGCATCATCCTTCTCATTGTTATGGC
CTATGATCGCTATGTCGCCATCTGTAAGCCTCTGCACTACGTGAAAATGATGACTCCTAGGGTGTGCTGC
TTGATGGTAGGAGGAGCTTGGGTAGGAGGATCTATGCATGCAACCATTCAGCTTCTCTTTATGTATCAAA
TACCATTCTGTAGCTCAAATATCATTGACCACTTTATGTGTGATTTGTTTCCATTGCTGAAGCTGGCCTG
CATGGATACACATATCTTGGGTCTCTTAGTCATTCTGAACAGTGGGGTGATGTGTGTCTCCATTTTCCTT
ATTCTCATTGCTTCCTACATGGTCATTCTCTGCTCCCTTAAGTCTTATAGTTCTGAAGGGAGACGCAAAG
CCCTCTCTACATGTAGCTCACATTTCACAGTGGTTGTATTGTTTTTTGTGCCATGTATTTTCTTATATAT
GAGGCCTGTGGTGACATTCCCAATAGACAAAGCAATGGCTGTGTCATTTACTATTGTTGAACCGATGTTA
AATCCTTTGATCTACACCTTGAGAAATACAGAGGTAAAATATGCTATAAAGAACATGTGCAGAAAACAGG
GGTCCCACTAA

Translation (306 aa):
MMNKNNVTEFILLGVTRDPELRKILSVLFLIMYMATVFGNLLIVVTITRSPSLRSPMYFFLLSLSLMDVT
YSSVIAPKLIMDSLSERTIVSFERCMTQLFAEHFFGGVGIILLIVMAYDRYVAICKPLHYVKMMTPRVCC
LMVGGAWVGGSMHATIQLLFMYQIPFCSSNIIDHFMCDLFPLLKLACMDTHILGLLVILNSGVMCVSIFL
ILIASYMVILCSLKSYSSEGRRKALSTCSSHFTVVVLFFVPCIFLYMRPVVTFPIDKAMAVSFTIVEPML
NPLIYTLRNTEVKYAIKNMCRKQGSH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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