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Report for CCDS16345.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16345.1 Public Mus musculus 2 Or4a27 23 108 98 CCDS HistoryNCBI Gene:433449Re-query CCDS DB by CCDS ID:16345.1Re-query CCDS DB by GeneID:433449See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16345.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099815.1 ENSMUSP00000097403.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099815.1Link to Ensembl Protein Viewer:ENSMUSP00000097403.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000099815Re-query CCDS DB by Protein ID:ENSMUSP00000097403
Original member Current member EBI ENSMUST00000213118.1 ENSMUSP00000150290.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000213118.1Link to Ensembl Protein Viewer:ENSMUSP00000150290.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000213118Re-query CCDS DB by Protein ID:ENSMUSP00000150290
Original member Current member NCBI NM_001005225.2 NP_001005225.1 Accepted alive Link to Nucleotide Sequence:NM_001005225.2Link to Protein Sequence:NP_001005225.1Re-query CCDS DB by Nucleotide ID:NM_001005225Re-query CCDS DB by Protein ID:NP_001005225Link to BLAST:NP_001005225.1

Chromosomal Locations for CCDS 16345.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88728653 88729597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGGAAAATCATAAAAATGTCACAGAGTTCATTTTCATGGGTCTTTGGCAGAATAGACAAATAGAGCTGC
TGTTCTTTTTCTTGTTCCTGCTTTGCTACCTGGCTGTCTTAATGGGGAACTCCGTCATCCTTCTCACCAT
CACCTGCAGCCACCTAATCGAACAACCAATGTATTATTTTCTCTGCCATCTTTCCCTCATGGACCTCTGC
TACACCTCCACTGTGATTCCCAGGCTCATCAGGGACTTGGCAGCAACAAGAAAAAACATTTCCTATAATG
AGTGCATGACCCAGCTCTTCACTGCCCACTTGCTAGCAGGTGTGGAAATCTTCATCCTGGTGTCCATGGC
CTTGGACCGCTATGTTGCCATTGTCAAGCCCCTGCACTACATGGTTATCATGAGCAGGAAGAGATGTGAT
ATGTTGATTGTCACGGCCTGGATACTGGGGTTCTGGCACTCCATTGCTTTACTACTGATGGTGCTCAGTC
TGCCGTTCTGTGGGCCCAACCACATCAATCACTACTTGTGTGACATCAAGCCTCTTCTGAAATTGGTCTG
TAAAGATCTTCATGTTGTTAGTATCTTAACAATTGCCAACTCTGGGATGGTGGTTGTTGCCATTTTTATT
GTACTACTTGTTTCTTACATACTCATATTGTATTCTCTGAGGACAAGATCATCTGCAGGGAAGCGCAAAG
CACTCTCTACCTGTAGTTCACACATAATGGTAGTAGTTTTATTTTTTGGGCCCTGTATTTATACCTATGT
TTTACCTGTAGGAAGTGAGAACAAGGATAAGGAAATTTCTGTGTTTTACACTGTGATTGCCCCAATGTTG
AATCCCCTTATCTATACTCTGAGAAACAGTGAGATGAAAAGTGCCATGCACAAGGTGTGGTCTCGGCTGT
CACTCAGAGTTGAAGTAAGTGAAAGAATATTGTGA

Translation (314 aa):
MENHKNVTEFIFMGLWQNRQIELLFFFLFLLCYLAVLMGNSVILLTITCSHLIEQPMYYFLCHLSLMDLC
YTSTVIPRLIRDLAATRKNISYNECMTQLFTAHLLAGVEIFILVSMALDRYVAIVKPLHYMVIMSRKRCD
MLIVTAWILGFWHSIALLLMVLSLPFCGPNHINHYLCDIKPLLKLVCKDLHVVSILTIANSGMVVVAIFI
VLLVSYILILYSLRTRSSAGKRKALSTCSSHIMVVVLFFGPCIYTYVLPVGSENKDKEISVFYTVIAPML
NPLIYTLRNSEMKSAMHKVWSRLSLRVEVSERIL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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