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Report for CCDS16350.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16350.1 Public Mus musculus 2 Or4c105 23 108 98 CCDS HistoryNCBI Gene:258454Re-query CCDS DB by CCDS ID:16350.1Re-query CCDS DB by GeneID:258454See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16350.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072057.1 ENSMUSP00000071935.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072057.1Link to Ensembl Protein Viewer:ENSMUSP00000071935.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000072057Re-query CCDS DB by Protein ID:ENSMUSP00000071935
Original member Current member EBI ENSMUST00000217059.1 ENSMUSP00000150743.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217059.1Link to Ensembl Protein Viewer:ENSMUSP00000150743.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217059Re-query CCDS DB by Protein ID:ENSMUSP00000150743
Original member Current member EBI ENSMUST00000214703.1 ENSMUSP00000151210.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214703.1Link to Ensembl Protein Viewer:ENSMUSP00000151210.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214703Re-query CCDS DB by Protein ID:ENSMUSP00000151210
Original member Current member NCBI NM_146462.2 NP_666673.1 Accepted alive Link to Nucleotide Sequence:NM_146462.2Link to Protein Sequence:NP_666673.1Re-query CCDS DB by Nucleotide ID:NM_146462Re-query CCDS DB by Protein ID:NP_666673Link to BLAST:NP_666673.1

Chromosomal Locations for CCDS 16350.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88817173 88818102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (930 nt):
ATGGAAATTAAGAACAACGTGACCGAGTTTGTTCTCCTGGGGCTCACACAGAATCTGCACTTGCAAAAAA
TAGTATTTGTTGTGTTTTTGGTTATCTATGTTTTCTCTGTGGTAGGAAATTTGCTCATTGTAATCACCAT
TACAAACAGCCAACTGTTGGGGTACCCTATGTATTACTTCCTGGCCTATCTCTCTTTTATTGATGCTTGC
TACTCCTCTGTCAATACACCTAAAGTGATTGCTGATTCACTACATAAAAGGAAGTCTATTAAATTCAATG
GATGCATGACCCAAGTTTTTGCAGAACATTTCATTGGAGGAACTGAAGTCATCTTGCTTACTGTGATGGC
TTATGACCGCTATGTAGCCATCTGTAAACCCCTGCACTATGCAACCATCATGAACAGACAACTCTGTAAC
ATCCTAGTGGGAGTGTCATGGGTTGGAGGCTTTCTTCATGGAGGTATACAAATTCTTTTCATTATTGGAT
TACCTTTCTGTGGCCCTAATGTCATAGACCATTTTATGTGTGATCTGAACCCTTTGCTTGATCTAGCCTG
TATTGACACCCACATCCTGGGGCTTTTTGTTGCTGCCAACAGTGGTTTCATTTGTCTGTTAAATTTCCTC
CTACTGCTTGTCTCCTACCTGGTCATTCTTAACTCCCTAAGGAGCCACAGTGCAGAAGGCAGGCGCAAAG
CCCTCTCTACCTGTGTTTCTCACATTACAGTAGTGGTTTTATTTTTTGTGCCCTGCATATTTGTGTACAT
GAGACCTGTAGCTACATTACCCATTGATAAAGCAGTTACTTTGTTTTATACTATGATAACTCCCATGTTG
AATCCATTAATCTATACCTTAAGAAATGCTCAGATGAAAAATGCCATTTGGAAATTGTTTAGTGTAAAAG
TTCAGTCAGATGACAAATAA

Translation (309 aa):
MEIKNNVTEFVLLGLTQNLHLQKIVFVVFLVIYVFSVVGNLLIVITITNSQLLGYPMYYFLAYLSFIDAC
YSSVNTPKVIADSLHKRKSIKFNGCMTQVFAEHFIGGTEVILLTVMAYDRYVAICKPLHYATIMNRQLCN
ILVGVSWVGGFLHGGIQILFIIGLPFCGPNVIDHFMCDLNPLLDLACIDTHILGLFVAANSGFICLLNFL
LLLVSYLVILNSLRSHSAEGRRKALSTCVSHITVVVLFFVPCIFVYMRPVATLPIDKAVTLFYTMITPML
NPLIYTLRNAQMKNAIWKLFSVKVQSDDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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