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Report for CCDS16438.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16438.1 Public Mus musculus 2 Atg13 23 108 98 CCDS HistoryNCBI Gene:51897Re-query CCDS DB by CCDS ID:16438.1Re-query CCDS DB by GeneID:51897See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16438.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000076803.11 ENSMUSP00000076081.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000076803.11Link to Ensembl Protein Viewer:ENSMUSP00000076081.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000076803Re-query CCDS DB by Protein ID:ENSMUSP00000076081
Original member Current member NCBI NM_145528.3 NP_663503.1 Accepted alive Link to Nucleotide Sequence:NM_145528.3Link to Protein Sequence:NP_663503.1Re-query CCDS DB by Nucleotide ID:NM_145528Re-query CCDS DB by Protein ID:NP_663503Link to BLAST:NP_663503.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_663503.1 479 Q91YI1-2 479 100% 0 0

Chromosomal Locations for CCDS 16438.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91676386 91676463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91678727 91678855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91679313 91679429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91679920 91679997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91680343 91680457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91681559 91681695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91684669 91684759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91685151 91685249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91685782 91685878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91686501 91686541 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91688641 91688781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91689791 91689837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91692428 91692547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91693925 91694005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91695918 91695986 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1440 nt):
ATGGAAACTGAACTCAGCTCCCAGGACAGGAAGGACTTGGACAAGTTTATTAAGTTTTTTGCCCTCAAGA
CTGTCCAAGTGATTGTCCAGGCTCGACTTGGAGAAAAGATTTGCACCCGCTCATCATCTTCCCCGACGGG
TTCAGATTGGTTCAATTTAGCAATCAAAGACATCCCAGAAGTCACCCATGAAGCAAAGAAGGCCCTGTCA
GGGCAGCTGCCTGCTGTGGGGCGATCTATGTGTGTGGAAATCTCACTCAAGACTTCTGAGGGAGATTCTA
TGGAGTTGGAAATTTGGTGTCTTGAAATGAATGAAAAGTGTGACAAAGAAATCAAAGTTTCCTACACTGT
ATACAACCGATTGTCACTGCTGCTGAAGTCTCTTCTCGCTATTACAAGGGTGACACCAGCCTATCGACTC
TCCAGGAAGCAAGGGCATGAATATGTAATTTTGTACAGGATTTATTTTGGGGAAGTTCAACTGAATGGCT
TAGGAGAAGGCTTCCAGACAGTTCGAGTTGGAACAGTGGGCACCCCTGTGGGCACCCTCACTCTTTCCTG
TGCTTATAGAATTAACTTGGCATTCATGTCCACCAGGCAATTTGAGAGGACCCCACCTATCATGGGGATT
ATCATTGATCACTTTGTTGACCGTCCCTATCCCAGCTCTTCTCCTATGCACCCCTGTAATTACAGAACTG
CTGAGGACGCAGGGGTCGCGTACCCGTCAGTGGAAGACTCTCAGGAAGTGTGTACCACATCTTTTTCCAC
ATCCCCTCCCTCCCAGCTGATGGTTCCTGGGAAGGAAGGCGGGGTAACTCTTGCTCCCAGCCACCCCACT
CATGGTGCCCAGGCTGATCCCGAGAGACTGGTGATGCACATGCCTTCTGATGGGACCCATTGTGCCGCCA
CGCCCTCAAGCAGTGAGGACACTGAGACTGTGTCTAACAGCAGTGAAGGACGGGCCTCACCCCATGACAT
CTTGGAGACTATCTTTGTCCGAAAAGTGGGAGCATTTGTCAACAAACCCATCAATCAGGTGACTGTGACG
AGTTTGGACATACCTTTCGCCATGTTTGCTCCCAAGAATTTGGAGCTGGAGGATGCTGATCCTATGGTGA
ATCCCCCGGAGTCCCCAGAGACCACATCTCCCCTCCATGGCAGCCTGCACTCAGATGGCTCCAGCGGGGG
CAGCGGGGGCAGCACACATGACGACTTTGTTATGATTGACTTTAAACCAGCTTTTTCTAAAGACGACATT
CTTCCAATGGACTTGGGGACCTTCTACCGTGAATTTCAGAACCCCCCTCAGCTGAGCAGCCTCTCCATAG
ATTTTGGAGCTCAGTCTATGGCGGAAGATTTGGACTCCTTACCAGAGAAGCTGGCTGTGCATGAGAAGAA
TGTCCGAGAATTCGATGCCTTTGTGGAAACCCTGCAGTAA

Translation (479 aa):
METELSSQDRKDLDKFIKFFALKTVQVIVQARLGEKICTRSSSSPTGSDWFNLAIKDIPEVTHEAKKALS
GQLPAVGRSMCVEISLKTSEGDSMELEIWCLEMNEKCDKEIKVSYTVYNRLSLLLKSLLAITRVTPAYRL
SRKQGHEYVILYRIYFGEVQLNGLGEGFQTVRVGTVGTPVGTLTLSCAYRINLAFMSTRQFERTPPIMGI
IIDHFVDRPYPSSSPMHPCNYRTAEDAGVAYPSVEDSQEVCTTSFSTSPPSQLMVPGKEGGVTLAPSHPT
HGAQADPERLVMHMPSDGTHCAATPSSSEDTETVSNSSEGRASPHDILETIFVRKVGAFVNKPINQVTVT
SLDIPFAMFAPKNLELEDADPMVNPPESPETTSPLHGSLHSDGSSGGSGGSTHDDFVMIDFKPAFSKDDI
LPMDLGTFYREFQNPPQLSSLSIDFGAQSMAEDLDSLPEKLAVHEKNVREFDAFVETLQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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