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Report for CCDS16504.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16504.1 Public Mus musculus 2 Fshb 23 108 98 CCDS HistoryNCBI Gene:14308Re-query CCDS DB by CCDS ID:16504.1Re-query CCDS DB by GeneID:14308See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16504.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028533.6 ENSMUSP00000028533.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028533.6Link to Ensembl Protein Viewer:ENSMUSP00000028533.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028533Re-query CCDS DB by Protein ID:ENSMUSP00000028533
Original member Current member NCBI NM_008045.3 NP_032071.1 Accepted alive Link to Nucleotide Sequence:NM_008045.3Link to Protein Sequence:NP_032071.1Re-query CCDS DB by Nucleotide ID:NM_008045Re-query CCDS DB by Protein ID:NP_032071Link to BLAST:NP_032071.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032071.1 130 Q60687 130 100% 0 0

Chromosomal Locations for CCDS 16504.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 107057280 107057510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 107058796 107058957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGATGAAGTTGATCCAGCTTTGCATCTTATTCTGGTGCTGGAGAGCAATCTGCTGCCATAGCTGTGAAT
TGACCAACATCACCATCTCAGTAGAGAAGGAAGAGTGCCGTTTCTGCATAAGCATCAATACCACTTGGTG
TGCGGGCTACTGCTACACTAGGGATCTGGTGTATAAGGACCCAGCTCGGCCCAATACCCAGAAAGTATGT
ACCTTCAAGGAGCTGGTATACGAGACCGTAAGATTGCCTGGCTGTGCCCGCCACTCAGACTCCCTCTACA
CATATCCAGTAGCCACTGAATGTCACTGTGGCAAGTGTGACAGCGACAGCACTGACTGCACCGTGAGGGG
CCTAGGACCCAGCTACTGCTCCTTCAGTGAAATGAAGGAATAA

Translation (130 aa):
MMKLIQLCILFWCWRAICCHSCELTNITISVEKEECRFCISINTTWCAGYCYTRDLVYKDPARPNTQKVC
TFKELVYETVRLPGCARHSDSLYTYPVATECHCGKCDSDSTDCTVRGLGPSYCSFSEMKE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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