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Report for CCDS16539.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16539.1 Public Mus musculus 2 Or4f15 23 108 98 CCDS HistoryNCBI Gene:258439Re-query CCDS DB by CCDS ID:16539.1Re-query CCDS DB by GeneID:258439See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 16539.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000207885.2 ENSMUSP00000146426.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000207885.2Link to Ensembl Protein Viewer:ENSMUSP00000146426.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000207885Re-query CCDS DB by Protein ID:ENSMUSP00000146426
Original member Current member NCBI NM_146447.1 NP_666658.1 Accepted alive Link to Nucleotide Sequence:NM_146447.1Link to Protein Sequence:NP_666658.1Re-query CCDS DB by Nucleotide ID:NM_146447Re-query CCDS DB by Protein ID:NP_666658Link to BLAST:NP_666658.1

Chromosomal Locations for CCDS 16539.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 111983134 111984096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGATGATTCTGATGTCGGAAGCAATGTATGGAATGAACTGCTCTGTAGTATCAGAGTTTGTGTTCCTCG
GGATCACTAATATATGGGAGGTTCAGTTTTTACTTTTTTTCTTCACCTTGCTGTTCTACTTTGCAAGTAT
GATTGGCAACCTTGTCATTGTGCTCACTGTAACCTTGGATCCTCATCTGAATTCCCCCTTGTATTTCCTC
TTAGCTAATCTCTCAGTCATTGATATGATATTCTGCTCGATTACAGCTCCTAAGATGATCTGTGACATTT
TCAAGAAACACAAAACCATCTCCTTCTGGGGATGTATAACTCAGATCTTCTTCAGTCATGCAGTTGGGGG
CACTGAGATGGTGCTGCTCATAGCCATGGCTTTTGACAGATATGTAGCCATATGCAAGCCTCTGCATTAC
CTGATCATCATGAGCCCACGAGTGTGTCTGTTCTTTTTAATCACTTCCTGGGTCATTGGTCTTATTCATT
CAGTGGTACAATTAGTGTTTGTTGTAGACTTGCCTTTCTGTGGTCCAAATACACTGGACAGTTTTTACTG
TGACCTGCCCCGACTCCTCAGACTTGCCTGCACAAACACTCAAGAGCTTGAGCTCATGGTCACTGTCAAC
AGTGGGCTCATTTCTGTGGGCTCCTTTCTTCTACTGGTCATTTCCTATATTTTCATTCTATTCACTGTTT
GGAAACATTCTTCTTGTGGATTATCTAAGGCCCTTTCCACTCTTTCAGCACACATCACTGTGGTCATCTT
GTTCTTTGGGCCACTAATGTTTTTCTATACGTGGCCTTCACCTACATCACACCTTGATAAATATCTTGCT
ATCTTCGATGCATTTATCACTCCTTTTTTGAATCCAGTCATCTATACATTCAGGAACAAAGACATGAAAG
TGGCAATGGGGAGACTATGGGGCTATCTTAGGCATTACAGGAAAATGTCATAA

Translation (320 aa):
MMILMSEAMYGMNCSVVSEFVFLGITNIWEVQFLLFFFTLLFYFASMIGNLVIVLTVTLDPHLNSPLYFL
LANLSVIDMIFCSITAPKMICDIFKKHKTISFWGCITQIFFSHAVGGTEMVLLIAMAFDRYVAICKPLHY
LIIMSPRVCLFFLITSWVIGLIHSVVQLVFVVDLPFCGPNTLDSFYCDLPRLLRLACTNTQELELMVTVN
SGLISVGSFLLLVISYIFILFTVWKHSSCGLSKALSTLSAHITVVILFFGPLMFFYTWPSPTSHLDKYLA
IFDAFITPFLNPVIYTFRNKDMKVAMGRLWGYLRHYRKMS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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