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Report for CCDS16547.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16547.1 Public Mus musculus 2 Or4f62 23 108 98 CCDS HistoryNCBI Gene:258022Re-query CCDS DB by CCDS ID:16547.1Re-query CCDS DB by GeneID:258022See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16547.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058176.6 ENSMUSP00000051938.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058176.6Link to Ensembl Protein Viewer:ENSMUSP00000051938.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000058176Re-query CCDS DB by Protein ID:ENSMUSP00000051938
Original member Current member EBI ENSMUST00000214063.1 ENSMUSP00000148937.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214063.1Link to Ensembl Protein Viewer:ENSMUSP00000148937.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214063Re-query CCDS DB by Protein ID:ENSMUSP00000148937
Original member Current member EBI ENSMUST00000217533.1 ENSMUSP00000151164.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217533.1Link to Ensembl Protein Viewer:ENSMUSP00000151164.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217533Re-query CCDS DB by Protein ID:ENSMUSP00000151164
Original member Current member NCBI NM_001011802.2 NP_001011802.1 Accepted alive Link to Nucleotide Sequence:NM_001011802.2Link to Protein Sequence:NP_001011802.1Re-query CCDS DB by Nucleotide ID:NM_001011802Re-query CCDS DB by Protein ID:NP_001011802Link to BLAST:NP_001011802.1

Chromosomal Locations for CCDS 16547.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 112155953 112156915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (963 nt):
ATGGATGGAGGAAATCACTCAATGGTATCAGAATTTTTGTTGCTAGGCCTCACCAATTCATGGAGAATTC
AGATTCTCCTTTTTCTGTTCTTCACAGTATTTTATGTGGCAAGCATGCTGGGGAACCTGCTCATTGTGCT
CACAATCATCTCAGACCACCACCTGCACTCCCCCATGTACTTCCTGCTGGCAAACCTCTCCTTCATTGAT
ACAGGTGTGTCCAGCATCGCTACTCCAAAGATGATTTATGACCTCTTCAGAAAGCACAAAGTCATCTCCT
TGAACGGATGCATCACTCAGATGTTCTTCATCCACACTGTTGGGGGAACAGAGATGGTGTTGCTCATAGT
CATGGCCTATGACAGGTACATTGCTATCTGTAAGCCCCTCCACTACCTGACCATCATGAGTCTCAGAATG
TGCATTGTTCTTTTGGCTCTTGCTTGGATCATTGGCCTTATCCATTCTGTGGCCCAATTGGCTTTTGTTG
TAAATTTACCCTTCTGTGGAGCTAATAAAATGGACAGCTTTTACTGTGATTTTCCTCGGTTCATCAAACT
CGCATGTACAGACACATACAGACTGGAGTTCCTGGTCGCTGCCAACAGTGGTTTCATCTCCATGGCCACC
TTCTTCATCCTGATTGTGTCTTACATCTTCATTCTGGTCACAGTTCGTAAACACTCCTCAGGTGCTTCCT
CCAAGGCCCTCTCCACTCTCTCAGCTCACATCACTGTGGTCGTTTTCTTCTTTGGTCCTTGCATTATTGT
CTATGTGTGGCCTTTCCCGACTTTACCCATAGATAAATTTTTAGCAATTTTCGATGTCATTATCACTCCT
TTTATGAATCCTCTCATCTATACACTTAGAAATAATGAGATGAAGGTTGCGATGAGGAGACTATTTATTA
GGGCTTTACATTTCAAAAATTTTTTTATTAGCAGTTTAAGAGATTTGAGTTAA

Translation (320 aa):
MDGGNHSMVSEFLLLGLTNSWRIQILLFLFFTVFYVASMLGNLLIVLTIISDHHLHSPMYFLLANLSFID
TGVSSIATPKMIYDLFRKHKVISLNGCITQMFFIHTVGGTEMVLLIVMAYDRYIAICKPLHYLTIMSLRM
CIVLLALAWIIGLIHSVAQLAFVVNLPFCGANKMDSFYCDFPRFIKLACTDTYRLEFLVAANSGFISMAT
FFILIVSYIFILVTVRKHSSGASSKALSTLSAHITVVVFFFGPCIIVYVWPFPTLPIDKFLAIFDVIITP
FMNPLIYTLRNNEMKVAMRRLFIRALHFKNFFISSLRDLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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