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Report for CCDS16571.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16571.1 Public Mus musculus 2 Fam98b 23 108 98 CCDS HistoryNCBI Gene:68215Re-query CCDS DB by CCDS ID:16571.1Re-query CCDS DB by GeneID:68215See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16571.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028825.4 ENSMUSP00000028825.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028825.4Link to Ensembl Protein Viewer:ENSMUSP00000028825.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000028825Re-query CCDS DB by Protein ID:ENSMUSP00000028825
Original member Current member NCBI NM_026620.3 NP_080896.2 Accepted alive Link to Nucleotide Sequence:NM_026620.3Link to Protein Sequence:NP_080896.2Re-query CCDS DB by Nucleotide ID:NM_026620Re-query CCDS DB by Protein ID:NP_080896Link to BLAST:NP_080896.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080896.2 429 Q80VD1 429 100% 0 0

Chromosomal Locations for CCDS 16571.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 117249768 117249838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117257634 117257779 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117259221 117259355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117260175 117260353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117262839 117262919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117263823 117263939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117267780 117267947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 117270606 117270998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGAGAGGGCCAGAGCTCGGGCCCGAAACCAGCATGGAAGGGGACGTTCTGGACACCTTGGAGGCGCTGG
GGTATAAGGGGCCACTGTTAGAGGAACAGGCACTCTCCAAGGCAGCAGAGGGTGGACTGTCTTCACCTGA
GTTTTCAGAGCTCTGCATTTGGTTAGGCTCCCAGATAAAGTCCTTATGCAACCTGGAAGAAAGCATCACT
TCAGCTGGGAGAGATGACCTAGAGAGCTTCCAGCTTGAGATAAGTGGGTTTTTAAAAGAGATGGCCTGTC
CATACTCGGTACTCGTCTCAGGAGACATTAAAGAGCGCCTCACAAAGAAGGATGACTGCTTGAAACTTCT
GTTGTTTTTAAGTACAGAACTTCAAGCTTTACAAATATTACAGAAGAAAAAACATAAAAATTCTCAGTTA
GATAAAAATAGTGAAATTTGCCAGGAAGTTCAAGCTGTATGTGATGCCCTCGGGGTCCCCAAGTCTGACA
CTTCAGACATTCCACTTCTGCTGAGCCAAGTGGAGTCAAAGGTGAAGGATATTCTCTGTAGAGTCCAGAA
AAACCATGTGGGAAAGCCATTGCTAAAGGTTGATTTAAGTTCTGAACAGGCAGAAAAACTGGAAAGAATT
AATGATGCTCTTTCCTGTGAATATGAGTGTCGCCGACGGATGTTAATGAAACGATTGGATGTGACAGTGC
AGTCCTTTGGATGGTCCGATAGAGCAAAGGCAAAAACAGATAACATAGCAAGAATTTACCAGCCCAAGCG
TTATGCTCTGTCGCCCAAGACAACAGTCACATTGGCACATCTGCTTGCCGCCCGTGAAGATCTGTCCAAG
ATCATCAGGACAAGCAGCGGTATCAGCCGGGAGAAGACTGCGTGCGCCATTAATAAGGTGCTTATGGGAC
GGGTGCCTGACAGGGGAGGACGGCCGAATGAAATTGAACCACCACCCCCTGAAATGCCCCCTTGGCAGAA
GAGACAAGAAGGCGGAGGGAGGGGTGGTTGGGGTGGTGGAGGTGGTGGTAGAGGAGGTGGTGGGGGTGGA
AGAGGTGGATGGGGTGGTGGGGGAGGGTGGGGAGGGGGAGGAGGAAGTGGAGGAGGGTGGGGAGGAAGTG
GTGGGGGAGGGGGTGGCCGAGGAGGTTTCCAAGGCAGGGGCGATTATGGTGGGAGGGGAGATTATGGTGG
AAGAGGGGGCTATGGTGGGAGAGGGGGCTATGGTGGGAGAGGTTATGGAGATCCATATGGAGGAGGAGGT
GGTGGTGGTGGTGGGTATAGAAGATATTAA

Translation (429 aa):
MRGPELGPETSMEGDVLDTLEALGYKGPLLEEQALSKAAEGGLSSPEFSELCIWLGSQIKSLCNLEESIT
SAGRDDLESFQLEISGFLKEMACPYSVLVSGDIKERLTKKDDCLKLLLFLSTELQALQILQKKKHKNSQL
DKNSEICQEVQAVCDALGVPKSDTSDIPLLLSQVESKVKDILCRVQKNHVGKPLLKVDLSSEQAEKLERI
NDALSCEYECRRRMLMKRLDVTVQSFGWSDRAKAKTDNIARIYQPKRYALSPKTTVTLAHLLAAREDLSK
IIRTSSGISREKTACAINKVLMGRVPDRGGRPNEIEPPPPEMPPWQKRQEGGGRGGWGGGGGGRGGGGGG
RGGWGGGGGWGGGGGSGGGWGGSGGGGGGRGGFQGRGDYGGRGDYGGRGGYGGRGGYGGRGYGDPYGGGG
GGGGGYRRY


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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